[RegCNET] RegCM-4.3.5.8 fails to compile and requires tweak in configure step

Mon Mar 13 11:41:38 CET 2017

I have found that Makefile asks for the file mod_bats_leaftemp.F90, but only the
file mod_bats_leaftemp.f90 exists. Thus, I changed the name of it. I compiled
with the tweak (that is needed because the makefile requires that
netcdf-fortran libraries are inside netcdf contrary to the convention given by
UNIDATA that splitted netcdf from netcdf-fortran to be independently
distributed) and it tries to compile mod_bats_leaftemp.F90. However, now it
faces a problem since it seems that certain functions have not been declared.
And also there are references to a mod_constants file that appears to be
missing.

gfortran -I/home/mpim/m300556/RegCMtests/RegCMlibs_build/RegCM-4.3.5.8/external
-I/home/mpim/m300556/RegCMtests/RegCMlibs/netcdf/netcdf-4.4.1.1/include
-I/home/mpim/m300556/RegCMtests/RegCMlibs/netcdf/netcdf-4.4.1.1/include
-I/home/mpim/m300556/RegCMtests/RegCMlibs_build/RegCM-4.3.5.8/Share  -O3
-mtune=native -fconvert=big-endian -fno-range-check
-I/home/mpim/m300556/RegCMtests/RegCMlibs_build/RegCM-4.3.5.8/Main/mpplib -c
mod_bats_leaftemp.F90
mod_bats_leaftemp.F90:410.53:

              rmini(n,j,i) = rsmin(lveg(n,j,i))/rmax0
                                                     1
Error: Unexpected STATEMENT FUNCTION statement at (1)
mod_bats_leaftemp.F90:422.40:

              radf(n,j,i) = rilmax/radfi
                                        1
Error: Unexpected STATEMENT FUNCTION statement at (1)
mod_bats_leaftemp.F90:419.55:

                radfi = radfi + (rad(il)+radd(il)+rmini(n,j,i)) / &
                                                       1
Error: Function 'rmini' at (1) has no IMPLICIT type
mod_bats_leaftemp.F90:437.28:

              seas = d_one/(rmini(n,j,i)+fseas(tlef(n,j,i),lveg(n,j,i)))
                            1
Error: Function 'rmini' at (1) has no IMPLICIT type
mod_bats_leaftemp.F90:438.52:

              lftrs(n,j,i) = rsmin(lveg(n,j,i))*radf(n,j,i)*seas*vpdf
                                                    1
Error: Function 'radf' at (1) has no IMPLICIT type
make[3]: *** [mod_bats_leaftemp.o] Error 1
Makefile:641: recipe for target 'mod_bats_leaftemp.o' failed

As a note, before changing the name to mod_bats_leaftemp.F90. I have compiled
it in another platform and I received the same result as reported in the
initial support issue. I would conclude that the actual packaged version of
RegCM-4.3.5.8 is defective.

------------------------------------
Diego Jiménez de la Cuesta Otero
Doktorand IMPRS-ESM
Max-Planck-Institut für Meteorologie
Atmosphäre im Erdsystem/Klimadynamik
Bundesstraße 53, Raum B429
D-20146 Hamburg

Tel.: +49 (0) 40 41173 386
Mob.: +49 (0)170 8139 769
Email: diego.jimenez at mpimet.mpg.de
------------------------------------

Sic Transit Gloria Mundi.

2017-03-10 22:33 GMT+01:00 Fís. Diego Jiménez de la Cuesta <
diego.jimenez at mpimet.mpg.de>:

> First, when configuring RegCM, once the prerequisites are built, tested and
> installed, it seems that RegCM tries to find the netcdf.mod from netcdf-fortran
> inside the include directory of netcdf and not in netcdf-fortran include
> directory. This happens althought I am giving configure the adequate CPPFLAGS
> paths to the include directories. Then I have made a soft link to the mod
> file.
>
> Second, once the configure problem is solved (in an ugly manner) as told
> before, when compiling batslib in the make stage it simply stops and says:
>
> *** No hay ninguna regla para construir el objetivo 'mod_bats_leaftemp.F90',
> necesario para 'mod_bats_leaftemp.o'.  Alto.
>
> or translated:
>
> *** No rule to make target 'mod_bats_leaftemp.F90', needed by
> 'mod_bats_leaftemp.o'. Stop.
>
> Here, I have no clue what is going on.
>
> ---------------------------------Build
> details----------------------------------
>
> First I made a build with mvapich2 library, but later I tried a mpich build,
> since I thought that it could be a source of error. This is not the case, since
> both end at the same error in batslib and also when mpif90 is used for some of
> the modules before batslib both --mvapich2 and mpich-- succeed in the build of
> them.
>
> I am building zlib, mpich, hdf5, netcdf and netcdf-fortran from source with gcc
> and gfortran, using the following commands
>
> zlibnam=zlib-1.2.11
> zlibbdir=${libsb}/${zlibnam}
> zlibidir=${libs}/zlib/${zlibnam}
>
> cd ${zlibbdir}
> ./configure --prefix=${zlibidir} --static
> make
> make test
> make check
> make install
>
>
>
> mpicnam=mpich-3.2
> mpicbdir=${libsb}/${mpicnam}
> mpicidir=${libs}/mpich/${mpicnam}
>
> cd ${mpicbdir}
> ./configure --prefix=${mpicidir}
> make
> make test
> make check
> make install
>
>
>
> hdf5nam=hdf5-1.10.0
> hdf5bdir=${libsb}/${hdf5nam}-patch1
> hdf5idir=${libs}/hdf5/${hdf5nam}
>
> cd ${hdf5bdir}
> ./configure --prefix=${hdf5idir}
> --with-zlib=${zlibidir}/include,${zlibidir}/lib --disable-shared --disable-cxx
> --disable-fortran
> make
> make test
> make check
> make install
>
>
>
> ncdfnam=netcdf-4.4.1.1
> ncdfbdir=${libsb}/${ncdfnam}
> ncdfidir=${libs}/netcdf/${ncdfnam}
>
> cd ${ncdfbdir}
> CPPFLAGS="-I${hdf5idir}/include -I${zlibidir}/include"
> LDFLAGS="-L${hdf5idir}/lib -L${zlibidir}/lib" LIBS="-lhdf5_hl
> -lhdf5 -lz" ./configure --prefix=${ncdfidir} --disable-shared
> --disable-dap --enable-netcdf4
> make
> make test
> make check
> make install
>
>
>
> nfornam=netcdf-fortran-4.4.4
> nforbdir=${libsb}/${nfornam}
> nforidir=${libs}/netcdf-fortran/${nfornam}
>
> cd ${nforbdir}
> export PATH=${ncdfidir}/bin:${PATH}
> CPPFLAGS="-I${ncdfidir}/include -I${hdf5idir}/include
> -I${zlibidir}/include" LDFLAGS="-L${ncdfidir}/lib -L${hdf5idir}/lib
> -L${zlibidir}/lib" LIBS="-lnetcdf -lhdf5_hl -lhdf5 -lz"
> ./configure --prefix=${nforidir} --disable-shared
> make
> make test
> make check
> make install
>
> ln -s ${nforidir}/include/* ${ncdfidir}/include/
>
>
>
> regcmnam=RegCM-4.3.5.8
> regcmbdir=${libsb}/${regcmnam}
> regcmidir=${libs}/RegCM/${regcmnam}
>
> tar -zxvf ${regcmnam}.tar.gz
> cd ${regcmbdir}
> export
> PATH=${zlibidir}/bin:${mpicidir}/bin:${hdf5idir}/bin:${nforidir}/bin:$PATH
> ./configure CPPFLAGS="-I${nforidir}/include -I${ncdfidir}/include
> -I${hdf5idir}/include -I${zlibidir}/include -I${mpicidir}/include"
> LDFLAGS="-L${nforidir}/lib -L${ncdfidir}/lib -L${hdf5idir}/lib
> -L${zlibidir}/lib -L${mpicidir}/lib" LIBS="-lnetcdff -lnetcdf
> -lhdf5_hl -lhdf5 -lz" --prefix=${regcmidir}
> make
> #make test
> #make check
> #make install
>
>
>
> ------------------------------------
> Diego Jiménez de la Cuesta Otero
> Doktorand IMPRS-ESM
> Max-Planck-Institut für Meteorologie
> Atmosphäre im Erdsystem/Klimadynamik
> Bundesstraße 53, Raum B429
> D-20146 Hamburg
>
> Tel.: +49 (0) 40 41173 386 <+49%2040%2041173386>
> Mob.: +49 (0)170 8139 769 <+49%20170%208139769>
> Email: diego.jimenez at mpimet.mpg.de
> ------------------------------------
>
> Sic Transit Gloria Mundi.
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.ictp.it/pipermail/regcnet/attachments/20170313/8357ae7f/attachment-0001.html>