[RegCNET] RegCM-4.3.5.8 fails to compile and requires tweak in configure step

Mon Mar 13 11:42:53 CET 2017

I have tried modifying the Makefile of batslib changing to mod_bats_leaftemp.f90
the dependencies to construct mod_bats_leaftemp.o. However, the same problem, as
in the former follow-up, arises. This appears to be, as I have said before, a
problem of that the model has been packaged with some parts missing or with
defective files.

It does not apply for me to migrate to the most recent version, since I want to
compare some results of version 4.3.5.6 with a version that is equivalent. Then
this error is blocking my research. Please, help me.

------------------------------------
Diego Jiménez de la Cuesta Otero
Doktorand IMPRS-ESM
Max-Planck-Institut für Meteorologie
Atmosphäre im Erdsystem/Klimadynamik
Bundesstraße 53, Raum B429
D-20146 Hamburg

Tel.: +49 (0) 40 41173 386
Mob.: +49 (0)170 8139 769
Email: diego.jimenez at mpimet.mpg.de
------------------------------------

Sic Transit Gloria Mundi.

2017-03-13 11:41 GMT+01:00 Fís. Diego Jiménez de la Cuesta <
diego.jimenez at mpimet.mpg.de>:

> I have found that Makefile asks for the file mod_bats_leaftemp.F90, but only the
> file mod_bats_leaftemp.f90 exists. Thus, I changed the name of it. I compiled
> with the tweak (that is needed because the makefile requires that
> netcdf-fortran libraries are inside netcdf contrary to the convention given by
> UNIDATA that splitted netcdf from netcdf-fortran to be independently
> distributed) and it tries to compile mod_bats_leaftemp.F90. However, now it
> faces a problem since it seems that certain functions have not been declared.
> And also there are references to a mod_constants file that appears to be
> missing.
>
> gfortran -I/home/mpim/m300556/RegCMtests/RegCMlibs_build/RegCM-4.3.5.8/external
> -I/home/mpim/m300556/RegCMtests/RegCMlibs/netcdf/netcdf-4.4.1.1/include
> -I/home/mpim/m300556/RegCMtests/RegCMlibs/netcdf/netcdf-4.4.1.1/include
> -I/home/mpim/m300556/RegCMtests/RegCMlibs_build/RegCM-4.3.5.8/Share  -O3
> -mtune=native -fconvert=big-endian -fno-range-check
> -I/home/mpim/m300556/RegCMtests/RegCMlibs_build/RegCM-4.3.5.8/Main/mpplib -c
> mod_bats_leaftemp.F90
> mod_bats_leaftemp.F90:410.53:
>
>               rmini(n,j,i) = rsmin(lveg(n,j,i))/rmax0
>                                                      1
> Error: Unexpected STATEMENT FUNCTION statement at (1)
> mod_bats_leaftemp.F90:422.40:
>
>               radf(n,j,i) = rilmax/radfi
>                                         1
> Error: Unexpected STATEMENT FUNCTION statement at (1)
> mod_bats_leaftemp.F90:419.55:
>
>                 radfi = radfi + (rad(il)+radd(il)+rmini(n,j,i)) / &
>                                                        1
> Error: Function 'rmini' at (1) has no IMPLICIT type
> mod_bats_leaftemp.F90:437.28:
>
>               seas = d_one/(rmini(n,j,i)+fseas(tlef(n,j,i),lveg(n,j,i)))
>                             1
> Error: Function 'rmini' at (1) has no IMPLICIT type
> mod_bats_leaftemp.F90:438.52:
>
>               lftrs(n,j,i) = rsmin(lveg(n,j,i))*radf(n,j,i)*seas*vpdf
>                                                     1
> Error: Function 'radf' at (1) has no IMPLICIT type
> make[3]: *** [mod_bats_leaftemp.o] Error 1
> Makefile:641: recipe for target 'mod_bats_leaftemp.o' failed
>
> As a note, before changing the name to mod_bats_leaftemp.F90. I have compiled
> it in another platform and I received the same result as reported in the
> initial support issue. I would conclude that the actual packaged version of
> RegCM-4.3.5.8 is defective.
>
>
> ------------------------------------
> Diego Jiménez de la Cuesta Otero
> Doktorand IMPRS-ESM
> Max-Planck-Institut für Meteorologie
> Atmosphäre im Erdsystem/Klimadynamik
> Bundesstraße 53, Raum B429
> D-20146 Hamburg
>
> Tel.: +49 (0) 40 41173 386 <+49%2040%2041173386>
> Mob.: +49 (0)170 8139 769 <+49%20170%208139769>
> Email: diego.jimenez at mpimet.mpg.de
> ------------------------------------
>
> Sic Transit Gloria Mundi.
>
> 2017-03-10 22:33 GMT+01:00 Fís. Diego Jiménez de la Cuesta <
> diego.jimenez at mpimet.mpg.de>:
>
>> First, when configuring RegCM, once the prerequisites are built, tested and
>> installed, it seems that RegCM tries to find the netcdf.mod from netcdf-fortran
>> inside the include directory of netcdf and not in netcdf-fortran include
>> directory. This happens althought I am giving configure the adequate CPPFLAGS
>> paths to the include directories. Then I have made a soft link to the mod
>> file.
>>
>> Second, once the configure problem is solved (in an ugly manner) as told
>> before, when compiling batslib in the make stage it simply stops and says:
>>
>> *** No hay ninguna regla para construir el objetivo 'mod_bats_leaftemp.F90',
>> necesario para 'mod_bats_leaftemp.o'.  Alto.
>>
>> or translated:
>>
>> *** No rule to make target 'mod_bats_leaftemp.F90', needed by
>> 'mod_bats_leaftemp.o'. Stop.
>>
>> Here, I have no clue what is going on.
>>
>> ---------------------------------Build
>> details----------------------------------
>>
>> First I made a build with mvapich2 library, but later I tried a mpich build,
>> since I thought that it could be a source of error. This is not the case, since
>> both end at the same error in batslib and also when mpif90 is used for some of
>> the modules before batslib both --mvapich2 and mpich-- succeed in the build of
>> them.
>>
>> I am building zlib, mpich, hdf5, netcdf and netcdf-fortran from source with gcc
>> and gfortran, using the following commands
>>
>> zlibnam=zlib-1.2.11
>> zlibbdir=${libsb}/${zlibnam}
>> zlibidir=${libs}/zlib/${zlibnam}
>>
>> cd ${zlibbdir}
>> ./configure --prefix=${zlibidir} --static
>> make
>> make test
>> make check
>> make install
>>
>>
>>
>> mpicnam=mpich-3.2
>> mpicbdir=${libsb}/${mpicnam}
>> mpicidir=${libs}/mpich/${mpicnam}
>>
>> cd ${mpicbdir}
>> ./configure --prefix=${mpicidir}
>> make
>> make test
>> make check
>> make install
>>
>>
>>
>> hdf5nam=hdf5-1.10.0
>> hdf5bdir=${libsb}/${hdf5nam}-patch1
>> hdf5idir=${libs}/hdf5/${hdf5nam}
>>
>> cd ${hdf5bdir}
>> ./configure --prefix=${hdf5idir}
>> --with-zlib=${zlibidir}/include,${zlibidir}/lib --disable-shared --disable-cxx
>> --disable-fortran
>> make
>> make test
>> make check
>> make install
>>
>>
>>
>> ncdfnam=netcdf-4.4.1.1
>> ncdfbdir=${libsb}/${ncdfnam}
>> ncdfidir=${libs}/netcdf/${ncdfnam}
>>
>> cd ${ncdfbdir}
>> CPPFLAGS="-I${hdf5idir}/include -I${zlibidir}/include"
>> LDFLAGS="-L${hdf5idir}/lib -L${zlibidir}/lib" LIBS="-lhdf5_hl
>> -lhdf5 -lz" ./configure --prefix=${ncdfidir} --disable-shared
>> --disable-dap --enable-netcdf4
>> make
>> make test
>> make check
>> make install
>>
>>
>>
>> nfornam=netcdf-fortran-4.4.4
>> nforbdir=${libsb}/${nfornam}
>> nforidir=${libs}/netcdf-fortran/${nfornam}
>>
>> cd ${nforbdir}
>> export PATH=${ncdfidir}/bin:${PATH}
>> CPPFLAGS="-I${ncdfidir}/include -I${hdf5idir}/include
>> -I${zlibidir}/include" LDFLAGS="-L${ncdfidir}/lib -L${hdf5idir}/lib
>> -L${zlibidir}/lib" LIBS="-lnetcdf -lhdf5_hl -lhdf5 -lz"
>> ./configure --prefix=${nforidir} --disable-shared
>> make
>> make test
>> make check
>> make install
>>
>> ln -s ${nforidir}/include/* ${ncdfidir}/include/
>>
>>
>>
>> regcmnam=RegCM-4.3.5.8
>> regcmbdir=${libsb}/${regcmnam}
>> regcmidir=${libs}/RegCM/${regcmnam}
>>
>> tar -zxvf ${regcmnam}.tar.gz
>> cd ${regcmbdir}
>> export
>> PATH=${zlibidir}/bin:${mpicidir}/bin:${hdf5idir}/bin:${nforidir}/bin:$PATH
>> ./configure CPPFLAGS="-I${nforidir}/include -I${ncdfidir}/include
>> -I${hdf5idir}/include -I${zlibidir}/include -I${mpicidir}/include"
>> LDFLAGS="-L${nforidir}/lib -L${ncdfidir}/lib -L${hdf5idir}/lib
>> -L${zlibidir}/lib -L${mpicidir}/lib" LIBS="-lnetcdff -lnetcdf
>> -lhdf5_hl -lhdf5 -lz" --prefix=${regcmidir}
>> make
>> #make test
>> #make check
>> #make install
>>
>>
>>
>> ------------------------------------
>> Diego Jiménez de la Cuesta Otero
>> Doktorand IMPRS-ESM
>> Max-Planck-Institut für Meteorologie
>> Atmosphäre im Erdsystem/Klimadynamik
>> Bundesstraße 53, Raum B429
>> D-20146 Hamburg
>>
>> Tel.: +49 (0) 40 41173 386 <+49%2040%2041173386>
>> Mob.: +49 (0)170 8139 769 <+49%20170%208139769>
>> Email: diego.jimenez at mpimet.mpg.de
>> ------------------------------------
>>
>> Sic Transit Gloria Mundi.
>>
>
>
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