[RegCNET] Non-Hydrostatic runs

Gazi Faruq gfaruq04 at gmail.com
Tue Feb 7 14:28:00 CET 2017


Dear All,

I am trying top run RegCM-4.6 for non-hydrostatic dynamical core. But model
is generating errors. The in file, error file and output log are attached
here.

It will be great to get the solution !

Thank you in advance.

Regards

G Faruk
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CFL>1: CFL =       1.0005 W =     -13.0512  I =   252  J =   229  K =    18
CFL>1: CFL =       1.0007 W =     -15.1526  I =   252  J =   229  K =    17
CFL>1: CFL =       1.0268 W =     -16.2925  I =   252  J =   229  K =    16
CFL>1: CFL =       1.0106 W =     -16.8550  I =   252  J =   229  K =    15
CFL>1: CFL =       1.2228 W =     -13.6667  I =   252  J =   229  K =    19
CFL>1: CFL =       1.2977 W =     -16.8618  I =   252  J =   229  K =    18
CFL>1: CFL =       1.2669 W =     -19.1202  I =   252  J =   229  K =    17
CFL>1: CFL =       1.2916 W =     -20.4313  I =   252  J =   229  K =    16
CFL>1: CFL =       1.2411 W =     -20.6462  I =   252  J =   229  K =    15
CFL>1: CFL =       1.1619 W =     -20.3957  I =   252  J =   229  K =    14
CFL>1: CFL =       1.0583 W =     -19.6793  I =   252  J =   229  K =    13
 -------------- FATAL CALLED ---------------
  Fatal in file: mod_sound.F90 at line:      709
 CFL violation
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  This is RegCM trunk
   SVN Revision: tag-4.6.0 compiled at: data : Dec 12 2016  time: 20:30:36

 : this run start at  : 2017-02-05 16:58:57+0300
 : it is submitted by : 
 : it is running on   : kcn286
 : it is using        :          240   processors
 : in directory       : 
 ..........
                       
 CPUS DIM1 =           15
 CPUS DIM2 =           16
 
 Reading model namelist file
 Using default dynamical parameters.
 Using default microphysical parameter.
 Will set cftotmax == 0.99
 DUST simulation
 Initial date of the global simulation: 2012-03-15 00:00:00 UTC         
 Initial date of this run             : 2012-03-15 00:00:00 UTC         
 Final date of this run               : 2012-03-25 00:00:00 UTC         
 Total simulation lenght              :          240  hours
 Timestep in seconds =   30.000000
 Reading Domain file : 
 ...._DOMAIN000.nc
 Setting IPCC scenario to A1B     
 Create SAV files :  T
 Create ATM files :  T
 Create RAD files :  T
 Create SRF files :  T
 Create STS files :  T
 Create CHE files :  T
 Create OPT files :  T
 Monthly SAV files are written
 Frequency in hours to create ATM :    6.0
 Frequency in hours to create RAD :    6.0
 Frequency in hours to create SRF :    3.0
 Frequency in hours to create CHE :    6.0
 Frequency in hours to create OPT :    6.0
 Physical Parameterizations
  Lateral Boundary conditions :  5
  Semi-Lagrangian Advection   :  0
  Land cumulus conv. scheme   :  2
  Ocean cumulus conv. scheme  :  2
  Moisture schem              :  2
  Ocean Flux scheme           :  2
  Zeng roughness formula      :  1
  Zeng roughness method       :  1
  Coupling with ocean         :  0
  Coupling with wave          :  0
  Pressure gradient force     :  0
  Prescribed LW emissivity    :  0
  Lake model in BATS          :  0
  Simulate diurnal sst cycle  :  0
  Simulate sea ice cover      :  0
  Simulate desert seasons     :  0
  Enable chem/aerosol model   :  1
  Large scale LWP as convect. :  0
  Cloud fraction scheme       :  0
  Marine stratocumulus fraction  0
 Boundary Pameterizations
  Nudge value high range     :  3.000000
  Nudge value medium range   :  2.000000
  Nudge value low range      :  1.000000
 Model Timestep Pameterizations
  time step for dynamical model in seconds :    30.000000
  time step for surface   model in seconds :   120.000000
  time step for cumulus   model in seconds :    30.000000
  time step for radiation model in minutes :    30.000000
  time step for emission  model in hours   :    18.000000
  time step for chemistry model in seconds :   720.000000
 Domain grid parameters:
  Map Projection        : ROTMER
  Dot Grid Full Extent  :  360x 300x 23
  Model Top Pressure    :    5.000000 cb
  Model Grid Spacing    :   10.000000 km
  Grid Center Latitude  :   22.500000 deg
  Grid Center longitude :   45.000000 deg
  Pole Latitude         :   22.500000 deg
  Pole longitude        :   45.000000 deg
 PBL limit for Holtstag
  Index of highest allowed pbl :  13
 SUBEX large scale precipitation parameters
  # of bottom no cloud model levels :  1
  Auto-conversion rate:         Land =    0.000250 Ocean =    0.000250
  Relative humidity thresholds: Land =    0.800000 Ocean =    0.900000
  Gultepe factors:              Land =    0.650000 Ocean =    0.300000
  Maximum relative humidity         :    1.010000
  Minimum relative humidity         :    0.010000
  RH0 temperature threshold         :  238.000000
  Land Raindrop Evaporation Rate    :    0.001000
  Ocean Raindrop Evaporation Rate   :    0.000010
  Land Raindrop Accretion Rate      :    3.000000
  Ocean Raindrop Accretion Rate     :    6.000000
  Maximum total cloud cover for rad :    0.990000
  Condensation threshold            :    1.000000
  Surface radiation hack            :           F
 Grell Convection Scheme used.
  Conversion rate :    0.002000
  Max Shear       :    0.900000
  Min Shear       :    0.300000
  Max PPT eff     :    0.800000
  Min PPT eff     :    0.200000
  Max PPT eff(o)  :    0.800000
  Min PPT eff(o)  :    0.200000
  Max PPT eff(x)  :    0.800000
  Min PPT eff(x)  :    0.200000
  Max PBC         :   50.000000
  Min Cloud Depth :  150.000000
  Max Cloud Base  :    0.400000
  Max Heating     :  500.000000
  Min Heating     : -250.000000
  Fritsch-Chappell (1980) Closure Assumption
  ABE removal timescale :   30.000000
 Convective Cloud Cover parameters after resolution scaling
  Maximum Convective Cloud Cover :    0.750000
  Convective Cloud Water         :    0.000300
 Reference atmosphere calculated.
 Full Coriolis coefficients computed.
 The surface energy budget is used to calculate the ground temperature.
 The radiation is computed every   60 time steps.
 Relaxation boundary conditions (exponential method)
# k       sigma           a      dsigma       twt(1)       twt(2)         qcon
  1      0.0000      0.0250      0.0500       0.0000       0.0000       0.0000
  2      0.0500      0.0750      0.0500       0.5000       0.5000       0.5000
  3      0.1000      0.1250      0.0500       0.5000       0.5000       0.5000
  4      0.1500      0.1750      0.0500       0.5000       0.5000       0.5000
  5      0.2000      0.2250      0.0500       0.5000       0.5000       0.5000
  6      0.2500      0.2750      0.0500       0.5000       0.5000       0.5000
  7      0.3000      0.3250      0.0500       0.5000       0.5000       0.5000
  8      0.3500      0.3750      0.0500       0.5000       0.5000       0.5000
  9      0.4000      0.4250      0.0500       0.5000       0.5000       0.5000
 10      0.4500      0.4750      0.0500       0.5000       0.5000       0.5000
 11      0.5000      0.5250      0.0500       0.5000       0.5000       0.5000
 12      0.5500      0.5750      0.0500       0.5000       0.5000       0.5000
 13      0.6000      0.6250      0.0500       0.5000       0.5000       0.5000
 14      0.6500      0.6750      0.0500       0.5000       0.5000       0.5000
 15      0.7000      0.7250      0.0500       0.5000       0.5000       0.5000
 16      0.7500      0.7750      0.0500       0.5000       0.5000       0.5000
 17      0.8000      0.8250      0.0500       0.5000       0.5000       0.5000
 18      0.8500      0.8700      0.0400       0.5556       0.4444       0.4444
 19      0.8900      0.9100      0.0400       0.5000       0.5000       0.5000
 20      0.9300      0.9450      0.0300       0.5714       0.4286       0.4286
 21      0.9600      0.9700      0.0200       0.6000       0.4000       0.4000
 22      0.9800      0.9850      0.0100       0.6667       0.3333       0.3333
 23      0.9900      0.9950      0.0100       0.5000       0.5000       0.5000
 24      1.0000
 READY IC DATA for 2012-03-15 00:00:00 UTC         
 SEARCH BC data for 2012031506, ktau =        0
 READY  BC from       2012031500  to   2012031506
 JDay     74.00000 solar declination angle =  -2.46844316 degrees
                   solar TSI irradiance    =    1361.1314 W/m^2
 Constant hor. diff. coef. =  0.100000E+05 m^2 s-1
 Maximum  hor. diff. coef. =  0.104167E+06 m^2 s-1
 Non-hydrostatic small dt limit =   26.71
 tracer cbmz index molw
 DUST01          -1  0.000000000000000E+000
 DUST02          -1  0.000000000000000E+000
 DUST03          -1  0.000000000000000E+000
 DUST04          -1  0.000000000000000E+000
 tracer index coreesponding to bdy species 
  # ichbdy2trac #
         1       2       3       4       0       0       0
         0       0       0       0       0       0       0
         0       0       0       0       0       0       0
         0       0       0       0       0       0       0
         0       0       0       0       0       0       0
         0       0       0       0       0       0       0
         0       0       0       0       0       0       0
         0       0
 Calling inidust
 READY ICCH DATA for 2012-03-15 00:00:00 UTC         
 SEARCH CHBC data for   2012031506
 READY  CHBC from       2012031500  to   2012031506
 Opening new output file 
 .._ATM.2012
 031500.nc
 Opening new output file 
 .._SRF.2012
 031500.nc
 Opening new output file 
 .._STS.2012
 031500.nc
 Opening new output file 
 .._RAD.2012
 031500.nc
 Opening new output file 
 .._DUST01.2
 012031500.nc
 Opening new output file 
 .._DUST02.2
 012031500.nc
 Opening new output file 
 .._DUST03.2
 012031500.nc
 Opening new output file 
 .._DUST04.2
 012031500.nc
 Opening new output file 
 .._OPT.2012
 031500.nc
 JDay     74.00000 solar declination angle =  -2.46844316 degrees
                   solar TSI irradiance    =    1361.1314 W/m^2
  # Ozone profile at (3,3) #
    0.502E-05  0.178E-05  0.964E-06  0.559E-06  0.348E-06  0.234E-06  0.176E-06
    0.142E-06  0.119E-06  0.102E-06  0.886E-07  0.793E-07  0.719E-07  0.659E-07
    0.619E-07  0.583E-07  0.558E-07  0.535E-07  0.522E-07  0.512E-07  0.504E-07
    0.504E-07  0.500E-07  0.497E-07  0.496E-07
 ktau =  0 : Short time step   15.00, nstep =   2, beta =  0.400, xkd =  0.100
 ktau =  2 : Short time step   15.00, nstep =   4, beta =  0.400, xkd =  0.100
 SRF variables written at 2012-03-15 03:00:00 UTC         
 $$$ 2012-03-15 03:00:00 UTC, ktau   =              360
 $$$ max value of CFL =  0.59587E+00
 $$$ no. of points with active convection =     281
 Abort called by computing node          157 at 2017-02-05 17:00:24.600 +0300
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 157 in communicator MPI COMMUNICATOR 3 DUP FROM 0 
with errorcode 1.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------


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