[RegCNET] error in running chemistry module
SUDIPTA GHOSH
sudiptaghosh006 at gmail.com
Thu Sep 29 11:13:47 CEST 2016
Firstly, thank you Sir for your valuable advice.
I checked the date attribute of both the interpolated and the global
emission i.e IIASA file and in both the cases the date attribute is same.
I am using CDO version 1.7.2 compiled with netcdf, jasper and grib. Shall I
change the CDO version?
I will be highly obliged if you can give some more suggestions on the same
because I am still unable to solve the error.
I am attaching the xx_CHEMISS.nc herewith.
CARB_CHEMISS.nc
<https://drive.google.com/file/d/0B4jsWDKkVaxXaElKMjJkWjFzVzQ/view?usp=drive_web>
On Thu, Sep 29, 2016 at 1:01 PM, <fsolmon at ictp.it> wrote:
> Hello
>
> This error is probably due to a bug of cdo that does reproduce the exact
> same date attribute than expected by regcm.It depends of which cdo version
> you are using. With ncdump -h, you should checko the date attribute of
> your interpolated emission file ( xx_CHEMISS.nc) .. it should be the same
> as in the global emission file. If not, you can correct the date attribute
> in the input CHEMISS file with nco for example.
>
> Fabien
>
>
> > Hello everyone,
> >
> > I am very new to climate modelling, so seeking an apology on the first
> > hand
> > if my question is very trivial but seriously I am not able to sort this
> > error.
> >
> > *I'm trying to run the RegCM 4.4.5.11 using the chemistry SUCA and CARB.
> > I
> > did all the pre-processing, but when I go to run the model this is the
> > error which I am getting in the log file:*
> >
> > This is RegCM trunk
> > SVN Revision: tag 4.4.5.10 compiled at: data : Sep 16 2016 time:
> > 14:07:26
> >
> > : this run start at : 2016-09-19 12:11:50+0530
> > : it is submitted by :
> > : it is running on : cn086
> > : it is using : 288 processors
> > : in directory : /home/cas/phd/asz148358/RCM445_PGI
> >
> > CPUS DIM1 = 16
> > CPUS DIM2 = 18
> >
> > Reading model namelist file
> > SUCA simulation
> > Initial date of the global simulation: 2004-01-01 00:00:00 UTC
> > Initial date of this run : 2004-01-01 00:00:00 UTC
> > Final date of this run : 2004-01-03 00:00:00 UTC
> > Total simulation lenght : 48 hours
> > Timestep in seconds = 30.000000
> > Split explicit dtau = 7.500000 15.000000
> > Reading Domain file :
> > /scratch/cas/phd/asz148358/REGCM/input/test_clm45/test_clm_DOMAIN000.nc
> > Setting IPCC scenario to A1B
> > Create SAV files : T
> > Create ATM files : T
> > Create RAD files : T
> > Create SRF files : T
> > Create STS files : T
> > Create CHE files : T
> > Create OPT files : T
> > Frequency in hours to create SAV : 7200.0
> > Frequency in hours to create ATM : 6.0
> > Frequency in hours to create RAD : 6.0
> > Frequency in hours to create SRF : 3.0
> > Frequency in hours to create CHE : 6.0
> > Frequency in hours to create OPT : 6.0
> > Physical Parameterizations
> > Lateral Boundary conditions : 5
> > Semi-Lagrangian Advection : 0
> > Land cumulus conv. scheme : 4
> > Ocean cumulus conv. scheme : 4
> > Moisture schem : 1
> > Ocean Flux scheme : 2
> > Zeng roughness formula : 2
> > Coupling with ROMS ocean : 0
> > Pressure gradient force : 0
> > Prescribed LW emissivity : 0
> > Lake model in BATS : 0
> > Simulate diurnal sst cycle : 0
> > Simulate sea ice cover : 0
> > Simulate desert seasons : 0
> > Enable chem/aerosol model : 1
> > Convective LWP scheme : 1
> > Boundary Pameterizations
> > Nudge value high range : 3.000000
> > Nudge value medium range : 2.000000
> > Nudge value low range : 1.000000
> > Model Timestep Pameterizations
> > time step for dynamical model in seconds : 30.000000
> > time step for surface model in seconds : 600.000000
> > time step for radiation model in minutes : 30.000000
> > time step for emission model in hours : 18.000000
> > time step for chemistry model in seconds : 900.000000
> > Domain grid parameters:
> > Map Projection : ROTMER
> > Dot Grid Full Extent : 420x 300x 18
> > Model Top Pressure : 5.000000 cb
> > Model Grid Spacing : 25.000000 km
> > Grid Center Latitude : 16.000000 deg
> > Grid Center longitude : 70.000000 deg
> > Pole Latitude : 16.000000 deg
> > Pole longitude : 70.000000 deg
> > PBL limit for Holtstag
> > Index of highest allowed pbl : 10
> > SUBEX large scale precipitation parameters
> > # of bottom no cloud model levels : 1
> > Auto-conversion rate: Land = 0.000250 Ocean = 0.000250
> > Relative humidity thresholds: Land = 0.800000 Ocean = 0.900000
> > Gultepe factors: Land = 0.400000 Ocean = 0.400000
> > Maximum relative humidity : 1.010000
> > RH0 temperature threshold : 238.000000
> > Land Raindrop Evaporation Rate : 0.001000
> > Ocean Raindrop Evaporation Rate : 0.001000
> > Land Raindrop Accretion Rate : 3.000000
> > Ocean Raindrop Accretion Rate : 3.000000
> > Maximum total cloud cover for rad : 0.750000
> > Condensation threshold : 1.000000
> > Emanuel (1991) Convection Scheme V4.3C used.
> > Min Convection origin : 0.950000
> > Autoconversion Threshold (ocean) : 0.001100
> > Autoconversion Threshold (land) : 0.001100
> > Autoconversion Threshold to zero : -55.000000
> > Entrainment Coefficient : 1.500000
> > Fractional area of uns. downdraft : 0.050000
> > Fractional area of uns. downdraft : 0.050000
> > Fall speed of rain : 50.000000
> > Fall speed of snow : 5.500000
> > Rain evaporation coefficient : 1.000000
> > Snow evaporation coefficient : 0.800000
> > Convective momentum transport coef: 0.700000
> > Downdraft velocity scale : 10.000000
> > Max negative perturbation blw LFC : 0.900000
> > Quasi-equilibrium approach rate 1 : 0.200000
> > Quasi-equilibrium approach rate 2 : 0.100000
> > Precipitation efficienct (land) : 0.999000
> > Precipitation efficienct (ocean) : 0.999000
> > Convective Cloud Cover parameters after resolution scaling
> > Maximum Convective Cloud Cover : 0.770833
> > Convective Cloud Water : 0.000300
> > The surface energy budget is used to calculate the ground temperature.
> > The radiation is computed every 60 time steps.
> > Relaxation boundary conditions (exponential method)
> > # k sigma a dsigma twt(1) twt(2)
> > qcon
> > 1 0.0000 0.0250 0.0500 0.0000 0.0000
> > 0.0000
> > 2 0.0500 0.0750 0.0500 0.5000 0.5000
> > 0.5000
> > 3 0.1000 0.1300 0.0600 0.4545 0.5455
> > 0.5455
> > 4 0.1600 0.1950 0.0700 0.4615 0.5385
> > 0.5385
> > 5 0.2300 0.2700 0.0800 0.4667 0.5333
> > 0.5333
> > 6 0.3100 0.3500 0.0800 0.5000 0.5000
> > 0.5000
> > 7 0.3900 0.4300 0.0800 0.5000 0.5000
> > 0.5000
> > 8 0.4700 0.5100 0.0800 0.5000 0.5000
> > 0.5000
> > 9 0.5500 0.5900 0.0800 0.5000 0.5000
> > 0.5000
> > 10 0.6300 0.6700 0.0800 0.5000 0.5000
> > 0.5000
> > 11 0.7100 0.7450 0.0700 0.5333 0.4667
> > 0.4667
> > 12 0.7800 0.8100 0.0600 0.5385 0.4615
> > 0.4615
> > 13 0.8400 0.8650 0.0500 0.5455 0.4545
> > 0.4545
> > 14 0.8900 0.9100 0.0400 0.5556 0.4444
> > 0.4444
> > 15 0.9300 0.9450 0.0300 0.5714 0.4286
> > 0.4286
> > 16 0.9600 0.9700 0.0200 0.6000 0.4000
> > 0.4000
> > 17 0.9800 0.9850 0.0100 0.6667 0.3333
> > 0.3333
> > 18 0.9900 0.9950 0.0100 0.5000 0.5000
> > 0.5000
> > 19 1.0000
> > Constant hor. diff. coef. = 0.312500E+05 m^2 s-1
> > Maximumt hor. diff. coef. = 0.325521E+06 m^2 s-1
> > READY IC DATA for 2004-01-01 00:00:00 UTC
> > SEARCH BC data for 2004010106
> > READY BC from 2004010100 to 2004010106
> > # Ozone profile at (3,3) #
> > 0.502E-05 0.219E-05 0.124E-05 0.737E-06 0.407E-06 0.229E-06
> > 0.159E-06
> > 0.120E-06 0.957E-07 0.801E-07 0.696E-07 0.630E-07 0.589E-07
> > 0.563E-07
> > 0.563E-07 0.546E-07 0.533E-07 0.525E-07 0.523E-07 0.520E-07
> > tracer cbmz index molw
> > BC_HL -1 0.000000000000000
> > BC_HB -1 0.000000000000000
> > OC_HL -1 0.000000000000000
> > OC_HB -1 0.000000000000000
> > SO2 11 64.00000000000000
> > SO4 -1 0.000000000000000
> > tracer index coreesponding to bdy species
> > # ichbdy2trac #
> > 2 1 4 3 5 6 0
> > 0 0 0 0 0 0 0
> > 0 0 0 0 0 0 0
> > 0 0 0 0 0 0 0
> > 0 0 0 0 0 0 0
> > 0 0 0 0 0 0 0
> > 0 0 0 0 0 0 0
> > 0 0
> > READ CHEM EMISSION for 2004010001
> > Opening ch. emission file
> > /scratch/cas/phd/asz148358/REGCM/input/test_clm45/test_clm_CHEMISS.nc
> > -------------------------------------------------------
> > Primary job terminated normally, but 1 process returned
> > a non-zero exit code.. Per user-direction, the job has been aborted.
> > -------------------------------------------------------
> > ------------------------------------------------------------
> --------------
> > mpirun detected that one or more processes exited with non-zero status,
> > thus causing
> > the job to be terminated. The first process to do so was:
> >
> > Process name: [[24040,1],0]
> > Exit code: 127
> >
> > *And the error file gave the following message:*
> >
> > PGFIO-F-231/formatted read/internal file/error on data conversion.
> > In source file mod_date.F90, at line number 1384
> > *It will be helpful if anybody can help me to sort this issue.*
> >
> > --
> > Regards
> >
> > Sudipta Ghosh
> > PhD Scholar, Center for Atmospheric Sciences
> > Indian Institute of Technology Delhi,India.
> > _______________________________________________
> > RegCNET mailing list
> > RegCNET at lists.ictp.it
> > https://lists.ictp.it/mailman/listinfo/regcnet
>
>
>
--
Regards
Sudipta Ghosh
PhD Scholar, Center for Atmospheric Sciences
Indian Institute of Technology Delhi,India.
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