CARB_CHEMISS.nc
Hello
This error is probably due to a bug of cdo that does reproduce the exact
same date attribute than expected by regcm.It depends of which cdo version
you are using. With ncdump -h, you should checko the date attribute of
your interpolated emission file ( xx_CHEMISS.nc) .. it should be the same
as in the global emission file. If not, you can correct the date attribute
in the input CHEMISS file with nco for example.
Fabien
> Hello everyone,
>
> I am very new to climate modelling, so seeking an apology on the first
> hand
> if my question is very trivial but seriously I am not able to sort this
> error.
>
> *I'm trying to run the RegCM 4.4.5.11 using the chemistry SUCA and CARB.
> I
> did all the pre-processing, but when I go to run the model this is the
> error which I am getting in the log file:*
> *And the error file gave the following message:*>
> This is RegCM trunk
> SVN Revision: tag 4.4.5.10 compiled at: data : Sep 16 2016 time:
> 14:07:26
>
> : this run start at : 2016-09-19 12:11:50+0530
> : it is submitted by :
> : it is running on : cn086
> : it is using : 288 processors
> : in directory : /home/cas/phd/asz148358/RCM445_PGI
>
> CPUS DIM1 = 16
> CPUS DIM2 = 18
>
> Reading model namelist file
> SUCA simulation
> Initial date of the global simulation: 2004-01-01 00:00:00 UTC
> Initial date of this run : 2004-01-01 00:00:00 UTC
> Final date of this run : 2004-01-03 00:00:00 UTC
> Total simulation lenght : 48 hours
> Timestep in seconds = 30.000000
> Split explicit dtau = 7.500000 15.000000
> Reading Domain file :
> /scratch/cas/phd/asz148358/REGCM/input/test_clm45/test_ clm_DOMAIN000.nc
> Setting IPCC scenario to A1B
> Create SAV files : T
> Create ATM files : T
> Create RAD files : T
> Create SRF files : T
> Create STS files : T
> Create CHE files : T
> Create OPT files : T
> Frequency in hours to create SAV : 7200.0
> Frequency in hours to create ATM : 6.0
> Frequency in hours to create RAD : 6.0
> Frequency in hours to create SRF : 3.0
> Frequency in hours to create CHE : 6.0
> Frequency in hours to create OPT : 6.0
> Physical Parameterizations
> Lateral Boundary conditions : 5
> Semi-Lagrangian Advection : 0
> Land cumulus conv. scheme : 4
> Ocean cumulus conv. scheme : 4
> Moisture schem : 1
> Ocean Flux scheme : 2
> Zeng roughness formula : 2
> Coupling with ROMS ocean : 0
> Pressure gradient force : 0
> Prescribed LW emissivity : 0
> Lake model in BATS : 0
> Simulate diurnal sst cycle : 0
> Simulate sea ice cover : 0
> Simulate desert seasons : 0
> Enable chem/aerosol model : 1
> Convective LWP scheme : 1
> Boundary Pameterizations
> Nudge value high range : 3.000000
> Nudge value medium range : 2.000000
> Nudge value low range : 1.000000
> Model Timestep Pameterizations
> time step for dynamical model in seconds : 30.000000
> time step for surface model in seconds : 600.000000
> time step for radiation model in minutes : 30.000000
> time step for emission model in hours : 18.000000
> time step for chemistry model in seconds : 900.000000
> Domain grid parameters:
> Map Projection : ROTMER
> Dot Grid Full Extent : 420x 300x 18
> Model Top Pressure : 5.000000 cb
> Model Grid Spacing : 25.000000 km
> Grid Center Latitude : 16.000000 deg
> Grid Center longitude : 70.000000 deg
> Pole Latitude : 16.000000 deg
> Pole longitude : 70.000000 deg
> PBL limit for Holtstag
> Index of highest allowed pbl : 10
> SUBEX large scale precipitation parameters
> # of bottom no cloud model levels : 1
> Auto-conversion rate: Land = 0.000250 Ocean = 0.000250
> Relative humidity thresholds: Land = 0.800000 Ocean = 0.900000
> Gultepe factors: Land = 0.400000 Ocean = 0.400000
> Maximum relative humidity : 1.010000
> RH0 temperature threshold : 238.000000
> Land Raindrop Evaporation Rate : 0.001000
> Ocean Raindrop Evaporation Rate : 0.001000
> Land Raindrop Accretion Rate : 3.000000
> Ocean Raindrop Accretion Rate : 3.000000
> Maximum total cloud cover for rad : 0.750000
> Condensation threshold : 1.000000
> Emanuel (1991) Convection Scheme V4.3C used.
> Min Convection origin : 0.950000
> Autoconversion Threshold (ocean) : 0.001100
> Autoconversion Threshold (land) : 0.001100
> Autoconversion Threshold to zero : -55.000000
> Entrainment Coefficient : 1.500000
> Fractional area of uns. downdraft : 0.050000
> Fractional area of uns. downdraft : 0.050000
> Fall speed of rain : 50.000000
> Fall speed of snow : 5.500000
> Rain evaporation coefficient : 1.000000
> Snow evaporation coefficient : 0.800000
> Convective momentum transport coef: 0.700000
> Downdraft velocity scale : 10.000000
> Max negative perturbation blw LFC : 0.900000
> Quasi-equilibrium approach rate 1 : 0.200000
> Quasi-equilibrium approach rate 2 : 0.100000
> Precipitation efficienct (land) : 0.999000
> Precipitation efficienct (ocean) : 0.999000
> Convective Cloud Cover parameters after resolution scaling
> Maximum Convective Cloud Cover : 0.770833
> Convective Cloud Water : 0.000300
> The surface energy budget is used to calculate the ground temperature.
> The radiation is computed every 60 time steps.
> Relaxation boundary conditions (exponential method)
> # k sigma a dsigma twt(1) twt(2)
> qcon
> 1 0.0000 0.0250 0.0500 0.0000 0.0000
> 0.0000
> 2 0.0500 0.0750 0.0500 0.5000 0.5000
> 0.5000
> 3 0.1000 0.1300 0.0600 0.4545 0.5455
> 0.5455
> 4 0.1600 0.1950 0.0700 0.4615 0.5385
> 0.5385
> 5 0.2300 0.2700 0.0800 0.4667 0.5333
> 0.5333
> 6 0.3100 0.3500 0.0800 0.5000 0.5000
> 0.5000
> 7 0.3900 0.4300 0.0800 0.5000 0.5000
> 0.5000
> 8 0.4700 0.5100 0.0800 0.5000 0.5000
> 0.5000
> 9 0.5500 0.5900 0.0800 0.5000 0.5000
> 0.5000
> 10 0.6300 0.6700 0.0800 0.5000 0.5000
> 0.5000
> 11 0.7100 0.7450 0.0700 0.5333 0.4667
> 0.4667
> 12 0.7800 0.8100 0.0600 0.5385 0.4615
> 0.4615
> 13 0.8400 0.8650 0.0500 0.5455 0.4545
> 0.4545
> 14 0.8900 0.9100 0.0400 0.5556 0.4444
> 0.4444
> 15 0.9300 0.9450 0.0300 0.5714 0.4286
> 0.4286
> 16 0.9600 0.9700 0.0200 0.6000 0.4000
> 0.4000
> 17 0.9800 0.9850 0.0100 0.6667 0.3333
> 0.3333
> 18 0.9900 0.9950 0.0100 0.5000 0.5000
> 0.5000
> 19 1.0000
> Constant hor. diff. coef. = 0.312500E+05 m^2 s-1
> Maximumt hor. diff. coef. = 0.325521E+06 m^2 s-1
> READY IC DATA for 2004-01-01 00:00:00 UTC
> SEARCH BC data for 2004010106
> READY BC from 2004010100 to 2004010106
> # Ozone profile at (3,3) #
> 0.502E-05 0.219E-05 0.124E-05 0.737E-06 0.407E-06 0.229E-06
> 0.159E-06
> 0.120E-06 0.957E-07 0.801E-07 0.696E-07 0.630E-07 0.589E-07
> 0.563E-07
> 0.563E-07 0.546E-07 0.533E-07 0.525E-07 0.523E-07 0.520E-07
> tracer cbmz index molw
> BC_HL -1 0.000000000000000
> BC_HB -1 0.000000000000000
> OC_HL -1 0.000000000000000
> OC_HB -1 0.000000000000000
> SO2 11 64.00000000000000
> SO4 -1 0.000000000000000
> tracer index coreesponding to bdy species
> # ichbdy2trac #
> 2 1 4 3 5 6 0
> 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0
> 0 0
> READ CHEM EMISSION for 2004010001
> Opening ch. emission file
> /scratch/cas/phd/asz148358/REGCM/input/test_clm45/test_ clm_CHEMISS.nc
> -------------------------------------------------------
> Primary job terminated normally, but 1 process returned
> a non-zero exit code.. Per user-direction, the job has been aborted.
> -------------------------------------------------------
> ------------------------------------------------------------ --------------
> mpirun detected that one or more processes exited with non-zero status,
> thus causing
> the job to be terminated. The first process to do so was:
>
> Process name: [[24040,1],0]
> Exit code: 127
>
>
> PGFIO-F-231/formatted read/internal file/error on data conversion.
> In source file mod_date.F90, at line number 1384
> *It will be helpful if anybody can help me to sort this issue.*
>
> --
> Regards
>
> Sudipta Ghosh
> PhD Scholar, Center for Atmospheric Sciences
> Indian Institute of Technology Delhi,India.
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