[RegCNET] problem in compiling RegCM-4.0
Bash Ora
mbo000.bash at gmail.com
Sat Feb 21 10:18:53 CET 2015
Dear users of RegCM4.0
I have problems when I Make terrain such as :
nc4file.c:(.text+0x1296): undefined reference to `H5T_NATIVE_INT_g'
nc4file.c:(.text+0x12a3): undefined reference to `H5open'
nc4file.c:(.text+0x12a9): undefined reference to `H5T_NATIVE_FLOAT_g'
nc4file.c:(.text+0x12b6): undefined reference to `H5open'
nc4file.c:(.text+0x12bc): undefined reference to `H5T_NATIVE_DOUBLE_g'
nc4file.c:(.text+0x12c9): undefined reference to `H5open'
nc4file.c:(.text+0x12cf): undefined reference to `H5T_NATIVE_UCHAR_g'
nc4file.c:(.text+0x12dc): undefined reference to `H5open'
nc4file.c:(.text+0x12e2): undefined reference to `H5T_NATIVE_USHORT_g'
nc4file.c:(.text+0x12ef): undefined reference to `H5open'
nc4file.c:(.text+0x12f5): undefined reference to `H5T_NATIVE_UINT_g'
nc4file.c:(.text+0x1302): undefined reference to `H5open'
nc4file.c:(.text+0x1308): undefined reference to `H5T_NATIVE_LLONG_g'
nc4file.c:(.text+0x1315): undefined reference to `H5open'
nc4file.c:(.text+0x131b): undefined reference to `H5T_NATIVE_ULLONG_g'
nc4file.c:(.text+0x132e): undefined reference to `H5Dget_type'
nc4file.c:(.text+0x1354): undefined reference to `H5Tget_native_type'
nc4file.c:(.text+0x1372): undefined reference to `H5Tget_class'
nc4file.c:(.text+0x13e5): undefined reference to `H5Tis_variable_str'
nc4file.c:(.text+0x1448): undefined reference to `H5Tequal'
nc4file.c:(.text+0x1488): undefined reference to `H5Tget_order'
nc4file.c:(.text+0x15c6): undefined reference to `H5Tclose'
nc4file.c:(.text+0x15dc): undefined reference to `H5Tclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In
function `read_hdf5_att':
nc4file.c:(.text+0x1681): undefined reference to `H5Aget_type'
nc4file.c:(.text+0x16a7): undefined reference to `H5Tget_native_type'
nc4file.c:(.text+0x16d1): undefined reference to `H5Tget_class'
nc4file.c:(.text+0x16fa): undefined reference to `H5Tis_variable_str'
nc4file.c:(.text+0x1710): undefined reference to `H5Tget_size'
nc4file.c:(.text+0x1762): undefined reference to `H5Aget_space'
nc4file.c:(.text+0x1782): undefined reference to `H5Sget_simple_extent_ndims'
nc4file.c:(.text+0x17a2): undefined reference to `H5Sget_simple_extent_npoints'
nc4file.c:(.text+0x17fb): undefined reference to `H5Tget_size'
nc4file.c:(.text+0x1862): undefined reference to `H5Sget_simple_extent_dims'
nc4file.c:(.text+0x191d): undefined reference to `H5Aread'
nc4file.c:(.text+0x19bf): undefined reference to `H5Aread'
nc4file.c:(.text+0x1a75): undefined reference to `H5Aread'
nc4file.c:(.text+0x1ad4): undefined reference to `H5Aread'
nc4file.c:(.text+0x1aec): undefined reference to `H5Tclose'
nc4file.c:(.text+0x1b04): undefined reference to `H5Sclose'
nc4file.c:(.text+0x1b28): undefined reference to `H5Tclose'
nc4file.c:(.text+0x1b3d): undefined reference to `H5Sclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In
function `read_type':
nc4file.c:(.text+0x1c02): undefined reference to `H5Topen2'
nc4file.c:(.text+0x1c28): undefined reference to `H5Tget_native_type'
nc4file.c:(.text+0x1c46): undefined reference to `H5Tget_size'
nc4file.c:(.text+0x1c64): undefined reference to `H5Tget_class'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In
function `.L222':
nc4file.c:(.text+0x1cb7): undefined reference to `H5Tis_variable_str'
nc4file.c:(.text+0x1cee): undefined reference to `H5Tget_super'
nc4file.c:(.text+0x1d0c): undefined reference to `H5Tget_size'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In
function `.L219':
nc4file.c:(.text+0x1d65): undefined reference to `H5Tget_size'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In
function `.L221':
nc4file.c:(.text+0x1d8e): undefined reference to `H5Tget_super'
nc4file.c:(.text+0x1dac): undefined reference to `H5Tget_size'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In
function `.L217':
nc4file.c:(.text+0x1eff): undefined reference to `H5Tget_nmembers'
nc4file.c:(.text+0x1f3a): undefined reference to `H5Tget_member_type'
nc4file.c:(.text+0x1f60): undefined reference to `H5Tget_native_type'
nc4file.c:(.text+0x1f88): undefined reference to `H5Tget_member_name'
nc4file.c:(.text+0x1fc2): undefined reference to `H5Tget_member_offset'
nc4file.c:(.text+0x1fd0): undefined reference to `H5Tget_class'
nc4file.c:(.text+0x1ff8): undefined reference to `H5Tget_array_ndims'
nc4file.c:(.text+0x2028): undefined reference to `H5Tget_array_dims1'
nc4file.c:(.text+0x2074): undefined reference to `H5Tget_super'
nc4file.c:(.text+0x20ef): undefined reference to `H5Tget_super'
nc4file.c:(.text+0x20fc): undefined reference to `H5Tget_super'
nc4file.c:(.text+0x2219): undefined reference to `H5Tget_nmembers'
nc4file.c:(.text+0x2271): undefined reference to `H5Tget_member_name'
nc4file.c:(.text+0x22bf): undefined reference to `H5Tget_member_value'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In
function `read_var':
nc4file.c:(.text+0x247c): undefined reference to `H5Pget_chunk_cache'
nc4file.c:(.text+0x2545): undefined reference to `H5Dget_create_plist'
nc4file.c:(.text+0x2565): undefined reference to `H5Pget_layout'
nc4file.c:(.text+0x25a1): undefined reference to `H5Pget_chunk'
nc4file.c:(.text+0x2634): undefined reference to `H5Pget_nfilters'
nc4file.c:(.text+0x269b): undefined reference to `H5Pget_filter2'
nc4file.c:(.text+0x27c7): undefined reference to `H5Pfill_value_defined'
nc4file.c:(.text+0x28a5): undefined reference to `H5Pget_fill_value'
nc4file.c:(.text+0x2a0b): undefined reference to `H5DSiterate_scales'
nc4file.c:(.text+0x2a4d): undefined reference to `H5Aget_num_attrs'
nc4file.c:(.text+0x2a7f): undefined reference to `H5Aclose'
nc4file.c:(.text+0x2aa4): undefined reference to `H5Aopen_idx'
nc4file.c:(.text+0x2ad6): undefined reference to `H5Aget_name'
nc4file.c:(.text+0x2cba): undefined reference to `H5Pclose'
nc4file.c:(.text+0x2ccf): undefined reference to `H5Aclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In
function `read_grp_atts':
nc4file.c:(.text+0x2d11): undefined reference to `H5Aget_num_attrs'
nc4file.c:(.text+0x2d40): undefined reference to `H5Aclose'
nc4file.c:(.text+0x2d55): undefined reference to `H5Aopen_idx'
nc4file.c:(.text+0x2d87): undefined reference to `H5Aget_name'
nc4file.c:(.text+0x2f59): undefined reference to `H5Aclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In
function `read_dataset':
nc4file.c:(.text+0x2fd1): undefined reference to `H5Dopen2'
nc4file.c:(.text+0x2ff1): undefined reference to `H5Dget_access_plist'
nc4file.c:(.text+0x3011): undefined reference to `H5Dget_space'
nc4file.c:(.text+0x3031): undefined reference to `H5Sget_simple_extent_ndims'
nc4file.c:(.text+0x307a): undefined reference to `H5Sget_simple_extent_dims'
nc4file.c:(.text+0x3095): undefined reference to `H5DSis_scale'
nc4file.c:(.text+0x311c): undefined reference to `H5DSget_num_scales'
nc4file.c:(.text+0x3185): undefined reference to `H5Pclose'
nc4file.c:(.text+0x319a): undefined reference to `H5Sclose'
nc4file.c:(.text+0x31c6): undefined reference to `H5Pclose'
nc4file.c:(.text+0x31db): undefined reference to `H5Dclose'
nc4file.c:(.text+0x31f0): undefined reference to `H5Sclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In
function `visit_link':
nc4file.c:(.text+0x3252): undefined reference to `H5Oopen_by_addr'
nc4file.c:(.text+0x3270): undefined reference to `H5Iget_type'
nc4file.c:(.text+0x3292): undefined reference to `H5Oclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In
function `nc4_iterate_link':
nc4file.c:(.text+0x32e0): undefined reference to `H5Eauto_is_v2'
nc4file.c:(.text+0x3301): undefined reference to `H5Eget_auto2'
nc4file.c:(.text+0x331d): undefined reference to `H5Eset_auto2'
nc4file.c:(.text+0x3331): undefined reference to `H5Eget_auto1'
nc4file.c:(.text+0x3345): undefined reference to `H5Eset_auto1'
nc4file.c:(.text+0x3378): undefined reference to `H5Literate'
nc4file.c:(.text+0x33b5): undefined reference to `H5Eset_auto2'
nc4file.c:(.text+0x33c9): undefined reference to `H5Eset_auto1'
nc4file.c:(.text+0x340b): undefined reference to `H5Literate'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In
function `nc4_rec_read_types':
nc4file.c:(.text+0x34f4): undefined reference to `H5Gopen2'
nc4file.c:(.text+0x3533): undefined reference to `H5Gopen2'
nc4file.c:(.text+0x3596): undefined reference to `H5Gget_num_objs'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In
function `nc4_rec_read_vars':
nc4file.c:(.text+0x3798): undefined reference to `H5Gget_num_objs'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In
function `nc4_open_file':
nc4file.c:(.text+0x3932): undefined reference to `H5check_version'
nc4file.c:(.text+0x3955): undefined reference to `H5check_version'
nc4file.c:(.text+0x39ff): undefined reference to `H5open'
nc4file.c:(.text+0x3a05): undefined reference to `H5P_CLS_FILE_ACCESS_g'
nc4file.c:(.text+0x3a0f): undefined reference to `H5Pcreate'
nc4file.c:(.text+0x3a37): undefined reference to `H5Pset_fclose_degree'
nc4file.c:(.text+0x3a7e): undefined reference to `H5Pset_cache'
nc4file.c:(.text+0x3aad): undefined reference to `H5Fopen'
nc4file.c:(.text+0x3b33): undefined reference to `H5Pclose'
nc4file.c:(.text+0x3b62): undefined reference to `H5Pclose'
nc4file.c:(.text+0x3b7e): undefined reference to `H5Fclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In
function `NC4_open':
nc4file.c:(.text+0x3c25): undefined reference to `H5Eset_auto1'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In
function `sync_netcdf4_file':
nc4file.c:(.text+0x4076): undefined reference to `H5Fflush'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In
function `close_netcdf4_file':
nc4file.c:(.text+0x4213): undefined reference to `H5Fclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `rec_reattach_scales':
nc4hdf.c:(.text+0xf4): undefined reference to `H5DSattach_scale'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `rec_detach_scales':
nc4hdf.c:(.text+0x276): undefined reference to `H5DSdetach_scale'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `nc4_open_var_grp2':
nc4hdf.c:(.text+0x336): undefined reference to `H5Dopen2'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `.L82':
nc4hdf.c:(.text+0x860): undefined reference to `H5open'
nc4hdf.c:(.text+0x866): undefined reference to `H5T_STD_I8LE_g'
nc4hdf.c:(.text+0x87d): undefined reference to `H5open'
nc4hdf.c:(.text+0x883): undefined reference to `H5T_STD_I8BE_g'
nc4hdf.c:(.text+0x894): undefined reference to `H5open'
nc4hdf.c:(.text+0x89a): undefined reference to `H5T_NATIVE_SCHAR_g'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `.L83':
nc4hdf.c:(.text+0x8ab): undefined reference to `H5open'
nc4hdf.c:(.text+0x8b1): undefined reference to `H5T_C_S1_g'
nc4hdf.c:(.text+0x8bb): undefined reference to `H5Tcopy'
nc4hdf.c:(.text+0x8e1): undefined reference to `H5Tset_strpad'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `.L84':
nc4hdf.c:(.text+0x909): undefined reference to `H5open'
nc4hdf.c:(.text+0x90f): undefined reference to `H5T_STD_I16LE_g'
nc4hdf.c:(.text+0x926): undefined reference to `H5open'
nc4hdf.c:(.text+0x92c): undefined reference to `H5T_STD_I16BE_g'
nc4hdf.c:(.text+0x93d): undefined reference to `H5open'
nc4hdf.c:(.text+0x943): undefined reference to `H5T_NATIVE_SHORT_g'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `.L85':
nc4hdf.c:(.text+0x95a): undefined reference to `H5open'
nc4hdf.c:(.text+0x960): undefined reference to `H5T_STD_I32LE_g'
nc4hdf.c:(.text+0x977): undefined reference to `H5open'
nc4hdf.c:(.text+0x97d): undefined reference to `H5T_STD_I32BE_g'
nc4hdf.c:(.text+0x98e): undefined reference to `H5open'
nc4hdf.c:(.text+0x994): undefined reference to `H5T_NATIVE_INT_g'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `.L86':
nc4hdf.c:(.text+0x9ab): undefined reference to `H5open'
nc4hdf.c:(.text+0x9b1): undefined reference to `H5T_IEEE_F32LE_g'
nc4hdf.c:(.text+0x9c8): undefined reference to `H5open'
nc4hdf.c:(.text+0x9ce): undefined reference to `H5T_IEEE_F32BE_g'
nc4hdf.c:(.text+0x9df): undefined reference to `H5open'
nc4hdf.c:(.text+0x9e5): undefined reference to `H5T_NATIVE_FLOAT_g'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `.L87':
nc4hdf.c:(.text+0x9fc): undefined reference to `H5open'
nc4hdf.c:(.text+0xa02): undefined reference to `H5T_IEEE_F64LE_g'
nc4hdf.c:(.text+0xa19): undefined reference to `H5open'
nc4hdf.c:(.text+0xa1f): undefined reference to `H5T_IEEE_F64BE_g'
nc4hdf.c:(.text+0xa30): undefined reference to `H5open'
nc4hdf.c:(.text+0xa36): undefined reference to `H5T_NATIVE_DOUBLE_g'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `.L88':
nc4hdf.c:(.text+0xa4d): undefined reference to `H5open'
nc4hdf.c:(.text+0xa53): undefined reference to `H5T_STD_U8LE_g'
nc4hdf.c:(.text+0xa6a): undefined reference to `H5open'
nc4hdf.c:(.text+0xa70): undefined reference to `H5T_STD_U8BE_g'
nc4hdf.c:(.text+0xa81): undefined reference to `H5open'
nc4hdf.c:(.text+0xa87): undefined reference to `H5T_NATIVE_UCHAR_g'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `.L89':
nc4hdf.c:(.text+0xa9e): undefined reference to `H5open'
nc4hdf.c:(.text+0xaa4): undefined reference to `H5T_STD_U16LE_g'
nc4hdf.c:(.text+0xabb): undefined reference to `H5open'
nc4hdf.c:(.text+0xac1): undefined reference to `H5T_STD_U16BE_g'
nc4hdf.c:(.text+0xad2): undefined reference to `H5open'
nc4hdf.c:(.text+0xad8): undefined reference to `H5T_NATIVE_USHORT_g'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `.L90':
nc4hdf.c:(.text+0xaef): undefined reference to `H5open'
nc4hdf.c:(.text+0xaf5): undefined reference to `H5T_STD_U32LE_g'
nc4hdf.c:(.text+0xb0c): undefined reference to `H5open'
nc4hdf.c:(.text+0xb12): undefined reference to `H5T_STD_U32BE_g'
nc4hdf.c:(.text+0xb23): undefined reference to `H5open'
nc4hdf.c:(.text+0xb29): undefined reference to `H5T_NATIVE_UINT_g'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `.L91':
nc4hdf.c:(.text+0xb40): undefined reference to `H5open'
nc4hdf.c:(.text+0xb46): undefined reference to `H5T_STD_I64LE_g'
nc4hdf.c:(.text+0xb5d): undefined reference to `H5open'
nc4hdf.c:(.text+0xb63): undefined reference to `H5T_STD_I64BE_g'
nc4hdf.c:(.text+0xb74): undefined reference to `H5open'
nc4hdf.c:(.text+0xb7a): undefined reference to `H5T_NATIVE_LLONG_g'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `.L92':
nc4hdf.c:(.text+0xb91): undefined reference to `H5open'
nc4hdf.c:(.text+0xb97): undefined reference to `H5T_STD_U64LE_g'
nc4hdf.c:(.text+0xbae): undefined reference to `H5open'
nc4hdf.c:(.text+0xbb4): undefined reference to `H5T_STD_U64BE_g'
nc4hdf.c:(.text+0xbc5): undefined reference to `H5open'
nc4hdf.c:(.text+0xbcb): undefined reference to `H5T_NATIVE_ULLONG_g'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `.L93':
nc4hdf.c:(.text+0xbdc): undefined reference to `H5open'
nc4hdf.c:(.text+0xbe2): undefined reference to `H5T_C_S1_g'
nc4hdf.c:(.text+0xbec): undefined reference to `H5Tcopy'
nc4hdf.c:(.text+0xc12): undefined reference to `H5Tset_size'
nc4hdf.c:(.text+0xc92): undefined reference to `H5Tclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `nc4_put_vara':
nc4hdf.c:(.text+0xf69): undefined reference to `H5Dopen2'
nc4hdf.c:(.text+0xf8b): undefined reference to `H5Dget_space'
nc4hdf.c:(.text+0xfbf): undefined reference to `H5Sget_simple_extent_dims'
nc4hdf.c:(.text+0x1103): undefined reference to `H5Sget_simple_extent_type'
nc4hdf.c:(.text+0x1113): undefined reference to `H5Screate'
nc4hdf.c:(.text+0x1165): undefined reference to `H5Sselect_hyperslab'
nc4hdf.c:(.text+0x1195): undefined reference to `H5Screate_simple'
nc4hdf.c:(.text+0x1276): undefined reference to `H5open'
nc4hdf.c:(.text+0x127c): undefined reference to `H5P_CLS_DATASET_XFER_g'
nc4hdf.c:(.text+0x1286): undefined reference to `H5Pcreate'
nc4hdf.c:(.text+0x1489): undefined reference to `H5Dextend'
nc4hdf.c:(.text+0x14aa): undefined reference to `H5Sclose'
nc4hdf.c:(.text+0x14c0): undefined reference to `H5Dget_space'
nc4hdf.c:(.text+0x150c): undefined reference to `H5Sselect_hyperslab'
nc4hdf.c:(.text+0x15c5): undefined reference to `H5Dwrite'
nc4hdf.c:(.text+0x1657): undefined reference to `H5Sclose'
nc4hdf.c:(.text+0x166c): undefined reference to `H5Sclose'
nc4hdf.c:(.text+0x1681): undefined reference to `H5Pclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `nc4_get_vara':
nc4hdf.c:(.text+0x18b3): undefined reference to `H5Dopen2'
nc4hdf.c:(.text+0x18d5): undefined reference to `H5Dget_space'
nc4hdf.c:(.text+0x1909): undefined reference to `H5Sget_simple_extent_dims'
nc4hdf.c:(.text+0x1cdb): undefined reference to `H5Sget_simple_extent_type'
nc4hdf.c:(.text+0x1ceb): undefined reference to `H5Screate'
nc4hdf.c:(.text+0x1d3d): undefined reference to `H5Sselect_hyperslab'
nc4hdf.c:(.text+0x1d6d): undefined reference to `H5Screate_simple'
nc4hdf.c:(.text+0x1e19): undefined reference to `H5open'
nc4hdf.c:(.text+0x1e1f): undefined reference to `H5P_CLS_DATASET_XFER_g'
nc4hdf.c:(.text+0x1e29): undefined reference to `H5Pcreate'
nc4hdf.c:(.text+0x1e75): undefined reference to `H5Dread'
nc4hdf.c:(.text+0x212f): undefined reference to `H5Sclose'
nc4hdf.c:(.text+0x2144): undefined reference to `H5Sclose'
nc4hdf.c:(.text+0x2159): undefined reference to `H5Pclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `write_coord_dimids':
nc4hdf.c:(.text+0x2242): undefined reference to `H5Screate_simple'
nc4hdf.c:(.text+0x225a): undefined reference to `H5open'
nc4hdf.c:(.text+0x2260): undefined reference to `H5T_NATIVE_INT_g'
nc4hdf.c:(.text+0x228d): undefined reference to `H5Acreate1'
nc4hdf.c:(.text+0x22ab): undefined reference to `H5open'
nc4hdf.c:(.text+0x22b1): undefined reference to `H5T_NATIVE_INT_g'
nc4hdf.c:(.text+0x22c6): undefined reference to `H5Awrite'
nc4hdf.c:(.text+0x22df): undefined reference to `H5Sclose'
nc4hdf.c:(.text+0x22f8): undefined reference to `H5Aclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `write_netcdf4_dimid':
nc4hdf.c:(.text+0x2337): undefined reference to `H5Screate'
nc4hdf.c:(.text+0x235d): undefined reference to `H5Eauto_is_v2'
nc4hdf.c:(.text+0x237e): undefined reference to `H5Eget_auto2'
nc4hdf.c:(.text+0x239a): undefined reference to `H5Eset_auto2'
nc4hdf.c:(.text+0x23ae): undefined reference to `H5Eget_auto1'
nc4hdf.c:(.text+0x23c2): undefined reference to `H5Eset_auto1'
nc4hdf.c:(.text+0x23f1): undefined reference to `H5Aopen_by_name'
nc4hdf.c:(.text+0x2415): undefined reference to `H5Eset_auto2'
nc4hdf.c:(.text+0x2429): undefined reference to `H5Eset_auto1'
nc4hdf.c:(.text+0x2434): undefined reference to `H5open'
nc4hdf.c:(.text+0x243a): undefined reference to `H5T_NATIVE_INT_g'
nc4hdf.c:(.text+0x2464): undefined reference to `H5Acreate1'
nc4hdf.c:(.text+0x2479): undefined reference to `H5open'
nc4hdf.c:(.text+0x247f): undefined reference to `H5T_NATIVE_INT_g'
nc4hdf.c:(.text+0x2497): undefined reference to `H5Awrite'
nc4hdf.c:(.text+0x24ad): undefined reference to `H5Sclose'
nc4hdf.c:(.text+0x24c3): undefined reference to `H5Aclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `var_create_dataset':
nc4hdf.c:(.text+0x2549): undefined reference to `H5open'
nc4hdf.c:(.text+0x254f): undefined reference to `H5P_CLS_DATASET_CREATE_g'
nc4hdf.c:(.text+0x2559): undefined reference to `H5Pcreate'
nc4hdf.c:(.text+0x2573): undefined reference to `H5open'
nc4hdf.c:(.text+0x2579): undefined reference to `H5P_CLS_DATASET_ACCESS_g'
nc4hdf.c:(.text+0x2583): undefined reference to `H5Pcreate'
nc4hdf.c:(.text+0x263d): undefined reference to `H5Pset_fill_value'
nc4hdf.c:(.text+0x26ad): undefined reference to `H5Pset_fill_value'
nc4hdf.c:(.text+0x270a): undefined reference to `H5Tclose'
nc4hdf.c:(.text+0x272f): undefined reference to `H5Pset_shuffle'
nc4hdf.c:(.text+0x275e): undefined reference to `H5Pset_deflate'
nc4hdf.c:(.text+0x2783): undefined reference to `H5Pset_fletcher32'
nc4hdf.c:(.text+0x2afd): undefined reference to `H5Pset_layout'
nc4hdf.c:(.text+0x2b29): undefined reference to `H5Pset_chunk'
nc4hdf.c:(.text+0x2b55): undefined reference to `H5Screate_simple'
nc4hdf.c:(.text+0x2b76): undefined reference to `H5Screate'
nc4hdf.c:(.text+0x2b9e): undefined reference to `H5Pset_attr_creation_order'
nc4hdf.c:(.text+0x2be4): undefined reference to `H5Pset_chunk_cache'
nc4hdf.c:(.text+0x2c47): undefined reference to `H5Dcreate2'
nc4hdf.c:(.text+0x2ca1): undefined reference to `H5DSset_scale'
nc4hdf.c:(.text+0x2d98): undefined reference to `H5Tclose'
nc4hdf.c:(.text+0x2dad): undefined reference to `H5Pclose'
nc4hdf.c:(.text+0x2dc2): undefined reference to `H5Pclose'
nc4hdf.c:(.text+0x2dd7): undefined reference to `H5Sclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `put_att_grpa':
nc4hdf.c:(.text+0x2fe7): undefined reference to `H5Eauto_is_v2'
nc4hdf.c:(.text+0x3008): undefined reference to `H5Eget_auto2'
nc4hdf.c:(.text+0x3024): undefined reference to `H5Eset_auto2'
nc4hdf.c:(.text+0x3038): undefined reference to `H5Eget_auto1'
nc4hdf.c:(.text+0x304c): undefined reference to `H5Eset_auto1'
nc4hdf.c:(.text+0x3061): undefined reference to `H5Adelete'
nc4hdf.c:(.text+0x3082): undefined reference to `H5Eset_auto2'
nc4hdf.c:(.text+0x3096): undefined reference to `H5Eset_auto1'
nc4hdf.c:(.text+0x3155): undefined reference to `H5Screate'
nc4hdf.c:(.text+0x3176): undefined reference to `H5Screate'
nc4hdf.c:(.text+0x319d): undefined reference to `H5Tset_size'
nc4hdf.c:(.text+0x31c0): undefined reference to `H5Tset_strpad'
nc4hdf.c:(.text+0x31e5): undefined reference to `H5Screate'
nc4hdf.c:(.text+0x3215): undefined reference to `H5Screate_simple'
nc4hdf.c:(.text+0x3252): undefined reference to `H5Acreate1'
nc4hdf.c:(.text+0x327d): undefined reference to `H5Awrite'
nc4hdf.c:(.text+0x32bf): undefined reference to `H5Tclose'
nc4hdf.c:(.text+0x32d4): undefined reference to `H5Aclose'
nc4hdf.c:(.text+0x32e9): undefined reference to `H5Sclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `commit_type':
nc4hdf.c:(.text+0x337b): undefined reference to `H5Tcreate'
nc4hdf.c:(.text+0x344f): undefined reference to `H5Tarray_create1'
nc4hdf.c:(.text+0x3491): undefined reference to `H5Tinsert'
nc4hdf.c:(.text+0x34b4): undefined reference to `H5Tclose'
nc4hdf.c:(.text+0x3532): undefined reference to `H5Tvlen_create'
nc4hdf.c:(.text+0x3571): undefined reference to `H5Tcreate'
nc4hdf.c:(.text+0x3600): undefined reference to `H5Tenum_create'
nc4hdf.c:(.text+0x3647): undefined reference to `H5Tenum_insert'
nc4hdf.c:(.text+0x368e): undefined reference to `H5Tcommit1'
nc4hdf.c:(.text+0x36be): undefined reference to `H5Tget_native_type'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `write_nc3_strict_att':
nc4hdf.c:(.text+0x3720): undefined reference to `H5Aget_num_attrs'
nc4hdf.c:(.text+0x3751): undefined reference to `H5Aopen_idx'
nc4hdf.c:(.text+0x3783): undefined reference to `H5Aget_name'
nc4hdf.c:(.text+0x37ba): undefined reference to `H5Aclose'
nc4hdf.c:(.text+0x37ee): undefined reference to `H5Screate'
nc4hdf.c:(.text+0x3805): undefined reference to `H5open'
nc4hdf.c:(.text+0x380b): undefined reference to `H5T_NATIVE_INT_g'
nc4hdf.c:(.text+0x3835): undefined reference to `H5Acreate1'
nc4hdf.c:(.text+0x384c): undefined reference to `H5open'
nc4hdf.c:(.text+0x3852): undefined reference to `H5T_NATIVE_INT_g'
nc4hdf.c:(.text+0x386a): undefined reference to `H5Awrite'
nc4hdf.c:(.text+0x388c): undefined reference to `H5Sclose'
nc4hdf.c:(.text+0x38a1): undefined reference to `H5Aclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `create_group':
nc4hdf.c:(.text+0x3914): undefined reference to `H5open'
nc4hdf.c:(.text+0x391a): undefined reference to `H5P_CLS_GROUP_CREATE_g'
nc4hdf.c:(.text+0x3924): undefined reference to `H5Pcreate'
nc4hdf.c:(.text+0x394a): undefined reference to `H5Pset_link_creation_order'
nc4hdf.c:(.text+0x396d): undefined reference to `H5Pset_attr_creation_order'
nc4hdf.c:(.text+0x39af): undefined reference to `H5Gcreate2'
nc4hdf.c:(.text+0x39d3): undefined reference to `H5Pclose'
nc4hdf.c:(.text+0x3a05): undefined reference to `H5Gopen2'
nc4hdf.c:(.text+0x3a3a): undefined reference to `H5Pclose'
nc4hdf.c:(.text+0x3a56): undefined reference to `H5Gclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `attach_dimscales':
nc4hdf.c:(.text+0x3b19): undefined reference to `H5DSattach_scale'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `var_exists':
nc4hdf.c:(.text+0x3c65): undefined reference to `H5Gget_num_objs'
nc4hdf.c:(.text+0x3ccb): undefined reference to `H5Oget_info_by_idx'
nc4hdf.c:(.text+0x3d2d): undefined reference to `H5Lget_name_by_idx'
nc4hdf.c:(.text+0x3da2): undefined reference to `H5Lget_name_by_idx'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `write_var':
nc4hdf.c:(.text+0x3fad): undefined reference to `H5Dclose'
nc4hdf.c:(.text+0x4028): undefined reference to `H5DSdetach_scale'
nc4hdf.c:(.text+0x40bb): undefined reference to `H5Dclose'
nc4hdf.c:(.text+0x40e2): undefined reference to `H5Gunlink'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `write_dim':
nc4hdf.c:(.text+0x41eb): undefined reference to `H5open'
nc4hdf.c:(.text+0x41f1): undefined reference to `H5P_CLS_DATASET_CREATE_g'
nc4hdf.c:(.text+0x41fb): undefined reference to `H5Pcreate'
nc4hdf.c:(.text+0x4264): undefined reference to `H5Pset_chunk'
nc4hdf.c:(.text+0x428e): undefined reference to `H5Screate_simple'
nc4hdf.c:(.text+0x42ed): undefined reference to `H5Pset_attr_creation_order'
nc4hdf.c:(.text+0x4302): undefined reference to `H5open'
nc4hdf.c:(.text+0x4308): undefined reference to `H5T_IEEE_F32BE_g'
nc4hdf.c:(.text+0x4333): undefined reference to `H5Dcreate1'
nc4hdf.c:(.text+0x435a): undefined reference to `H5Sclose'
nc4hdf.c:(.text+0x4375): undefined reference to `H5Pclose'
nc4hdf.c:(.text+0x43cb): undefined reference to `H5DSset_scale'
nc4hdf.c:(.text+0x4572): undefined reference to `H5Dextend'
nc4hdf.c:(.text+0x45cf): undefined reference to `H5Gmove2'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4hdf.o): In
function `nc4_rec_match_dimscales':
nc4hdf.c:(.text+0x7f83): undefined reference to `H5Gget_objinfo'
nc4hdf.c:(.text+0x80c2): undefined reference to `H5Dget_space'
nc4hdf.c:(.text+0x8144): undefined reference to `H5Sget_simple_extent_dims'
nc4hdf.c:(.text+0x8177): undefined reference to `H5Sget_simple_extent_type'
nc4hdf.c:(.text+0x8190): undefined reference to `H5Sclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4internal.o):
In function `find_var_shape_grp':
nc4internal.c:(.text+0x1b5): undefined reference to `H5Dget_space'
nc4internal.c:(.text+0x1d5): undefined reference to `H5Sget_simple_extent_type'
nc4internal.c:(.text+0x1f2): undefined reference to `H5Sget_simple_extent_ndims'
nc4internal.c:(.text+0x279): undefined reference to `H5Sget_simple_extent_dims'
nc4internal.c:(.text+0x2d2): undefined reference to `H5Sclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4internal.o):
In function `nc4_rec_find_hdf_type':
nc4internal.c:(.text+0x9d6): undefined reference to `H5Tequal'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4internal.o):
In function `var_list_del':
nc4internal.c:(.text+0x19ff): undefined reference to `H5Tclose'
nc4internal.c:(.text+0x1a36): undefined reference to `H5Tclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4internal.o):
In function `type_list_del':
nc4internal.c:(.text+0x1b6a): undefined reference to `H5Tclose'
nc4internal.c:(.text+0x1b90): undefined reference to `H5Tclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4internal.o):
In function `nc4_rec_grp_del':
nc4internal.c:(.text+0x1e72): undefined reference to `H5Dclose'
nc4internal.c:(.text+0x1ede): undefined reference to `H5Dclose'
nc4internal.c:(.text+0x1f81): undefined reference to `H5Gclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4internal.o):
In function `nc4_att_list_del':
nc4internal.c:(.text+0x2050): undefined reference to `H5Tclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4var.o): In
function `nc4_reopen_dataset':
nc4var.c:(.text+0x21): undefined reference to `H5open'
nc4var.c:(.text+0x27): undefined reference to `H5P_CLS_DATASET_ACCESS_g'
nc4var.c:(.text+0x31): undefined reference to `H5Pcreate'
nc4var.c:(.text+0x70): undefined reference to `H5Pset_chunk_cache'
nc4var.c:(.text+0x8c): undefined reference to `H5Dclose'
nc4var.c:(.text+0xb5): undefined reference to `H5Dopen2'
nc4var.c:(.text+0xd7): undefined reference to `H5Pclose'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4var.o): In
function `nc_def_var_nc4':
nc4var.c:(.text+0xe04): undefined reference to `H5Tget_native_type'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4var.o): In
function `NC4_rename_var':
nc4var.c:(.text+0x22b1): undefined reference to `H5Gmove'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4type.o): In
function `NC4_inq_type_equal':
nc4type.c:(.text+0x14e): undefined reference to `H5Tequal'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4attr.o): In
function `NC4_rename_att':
nc4attr.c:(.text+0x1438): undefined reference to `H5Adelete'
nc4attr.c:(.text+0x148b): undefined reference to `H5Adelete'
/usr/local/netcdf-4.1.3/lib/libnetcdf.a(libnetcdf4_la-nc4attr.o): In
function `NC4_del_att':
nc4attr.c:(.text+0x1709): undefined reference to `H5Adelete'
nc4attr.c:(.text+0x176c): undefined reference to `H5Dclose'
collect2: ld returned 1 exit status
make[1]: *** [terrain] Error 1
make[1]: Leaving directory
`/media/8d1a764a-78d5-4af4-bebe-72f9e84d14e3/un_cli/RegCM/start/RegCM-4.0/PreProc/Terrain'
make: *** [terrain] Error 2
how i can resolve it.
Regards.
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