[RegCNET] Fw: Re: Fw: error mksurfdataCLM45_CN_CROP run

[Samy Rateb]

Hello Graziano Giuliani

I tried to configure RegCM-4.4-SVN4648.tar.gz with the following configuration

./configure FC=gfortran CC=gcc --with-hdf5=/usr/local/hdf5/ --with-netcdf=/usr/local/netcdf-4.1.3 --enable-clm45 --enable-nc4

but an error appeared during compilation 

gfortran -I/home/samy/RegCM-4.4-SVN4648/external -I/usr/local/netcdf-4.1.3/include -I/usr/local/netcdf-4.1.3/include -DNETCDF4_HDF5 -DCLM45  -I/home/samy/RegCM-4.4-SVN4648/Share -DCN -DCROP -D'SVN_REV="4648"' -O3 -mtune=native -fconvert=big-endian -fno-range-check -finline-functions -c clm45_1dto2d.F90
clm45_1dto2d.F90:37.64:

  integer(ik4) :: ncid , ndims , nvars , natts , udimid , iomode
                                                                1
clm45_1dto2d.F90:30.6:

  use mod_dynparam , only : iomode
      2
Error: Symbol 'iomode' at (1) conflicts with symbol from module 'mod_dynparam', use-associated at (2)
clm45_1dto2d.F90:90.47:

  istatus = nf90_inquire(ncid,ndims,nvars,natts,udimid)
                                               1
Error: Symbol 'natts' at (1) has no IMPLICIT type
clm45_1dto2d.F90:82.48:

  istatus = nf90_open(ncfile, nf90_nowrite, ncid)
                                                1
Error: Symbol 'ncid' at (1) has no IMPLICIT type
clm45_1dto2d.F90:90.35:

  istatus = nf90_inquire(ncid,ndims,nvars,natts,udimid)
                                   1
Error: Symbol 'ndims' at (1) has no IMPLICIT type
clm45_1dto2d.F90:90.41:

  istatus = nf90_inquire(ncid,ndims,nvars,natts,udimid)
                                         1
Error: Symbol 'nvars' at (1) has no IMPLICIT type
clm45_1dto2d.F90:90.54:

  istatus = nf90_inquire(ncid,ndims,nvars,natts,udimid)
                                                      1
Error: Symbol 'udimid' at (1) has no IMPLICIT type
make[1]: *** [clm45_1dto2d.o] Error 1
make[1]: Leaving directory `/home/samy/RegCM-4.4-SVN4648/PostProc'
make: *** [install-recursive] Error 1


--- On Mon, 9/15/14, Graziano Giuliani <ggiulian at ictp.it> wrote:

> From: Graziano Giuliani <ggiulian at ictp.it>
> Subject: Re: Fw: error mksurfdataCLM45_CN_CROP run
> To: "Samy Rateb" <ratebsamy at yahoo.com>
> Cc: "regcnet at lists.ictp.it" <regcnet at lists.ictp.it>
> Date: Monday, September 15, 2014, 11:04 AM
> On 09/14/2014 12:36 PM,
> Samy Rateb wrote:
> > Hello Dr.Graziano
> Giuliani,
> > 
> > In this
> run, i tried to make nsg=5, so core dumped in the step
> ./bin/mksurfdataCLM45_CN_CROP regcm45.in, but when i made
> nsg=1, it ran successfully and the step mpirun -np 4
> ./bin/regcmMPI CLM45_CN_CROP regcm45.in runs successfully.
> So i can do nest down to 10 km with CLM4.5. So I think that
> the problem i cannot do nsg=5 with CLM4.5
> > 
> [...]
> 
> The problem is in the netcdf library netCDF3
> format not being able to
> handle BIG files.
> Read current netCDF3 limits on:
> 
> https://www.unidata.ucar.edu/software/netcdf/docs/netcdf/NetCDF-Classic-Format.html
> 
> I have switched the default
> format on all programs to the netCDF3 64-bit
> offset file format:
> 
> https://www.unidata.ucar.edu/software/netcdf/docs/netcdf/64_002dbit-Offset-Format.html
> 
> It is NOT HDF5 format, but it
> should allow to fit BIG data in.
> If you
> STILL have problems, consider using the NetCDF4 HDF5
> Classic
> format model
> 
> https://www.unidata.ucar.edu/software/netcdf/docs/netcdf/NetCDF_002d4-Classic-Model-Format.html
> 
> using the --enable-nc4
> flag.
> 
> I have a new packaged
> SVN snapshot under:
> 
> http://clima-dods.ictp.it/d8/transfer/WA/RegCM-4.4-SVN4648.tar.gz
> 
> G.
> 
> -- 
> Graziano Giuliani - Earth System Physics
> Section
> The Abdus Salam International Centre
> for Theoretical Physics
> Strada Costiera 11 -
> I - 34151 Trieste Italy
>
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