[RegCNET] Error with RegCM4.4 CLM45 runs
christy talabi
chrystali2002 at yahoo.co.uk
Fri Jun 6 14:04:02 CEST 2014
Dear RegCM users,
CLM version: 4.5 - RegCM 4470 - tag 4.4-rc28
Attempting to initialize the land model .....
Mask given by RegCM model has a total of 11712 land points
Attempting to initialize run control settings .....
Read in clm_inparm namelist from: rclm45.in
Read in clm_hydrology1_inparm namelist
Read in clm_soilhydrology_inparm namelist
Successfully initialized run control settings
define run:
source = Community Land Model CLM4.5
model_version = 4470 - tag 4.4-rc28
run type = initial
case title = RegCM driven CLM4.5
username =
hostname = talabi-ThinkPad-X230
input data files:
PFT physiology =
/home/talabi/REGCM/regcmglobal_dat/CLM45/pftdata/pft-physiology.c130503.nc
surface data = input//recm45_CLM45_surface.nc
land frac data = input//recm45_DOMAIN000.nc
enable_megan_emission : F
enable_urban_landunit : T
enable_more_crop_pft : F
snow optical properties file =
/home/talabi/REGCM/regcmglobal_dat/CLM45/snicardata/snicar_optics_5bnd_c090915.
nc
snow aging parameters file =
/home/talabi/REGCM/regcmglobal_dat/CLM45/snicardata/snicar_drdt_bst_fit_60_c070
416.nc
initial data is from RegCM atm model
atmospheric forcing data is from RegCM atm model
Large file support for output files is ON
model physics parameters:
flag for random perturbation test is not set
CO2 volume mixing ratio (umol/mol) = 355.000000000000
land-ice albedos (unitless 0-1) = 0.800000000000000
0.550000000000000
urban air conditioning/heating and wasteheat = OFF
urban traffic flux = F
more vertical layers = F
maxpatch_pft
= 17
allocate_all_vegpfts = T
perchroot (plant water stress based on unfrozen layers only) = F
perchroot (plant water stress based on time-integrated active layer only) = F
Lake Model Namelists:
Increased mixing relative to Hostetler wind-driven eddy expression
will be used for deep lakes exceeding depth 25.0000000000000
by a factor of 10.0000000000000 .
Albedo over melting lakes will approach values (visible, NIR):
0.100000000000000
0.100000000000000
as compared with 0.60, 0.40 for cold frozen lakes with no snow.
Attempting to read ldomain from input//recm45_DOMAIN000.nc
domain_check set = domain_set
domain_check decomped = T
domain_check ns = 29673
domain_check ni,nj = 189 157
domain_check clmlevel = gridcell
domain_check nbeg,nend =
1 2928
domain_check lonc = -53.7199172973633 47.7199172973633
domain_check latc = -34.4132232666016 -9.13381671905518
domain_check mask = 1 1
domain_check frac = 100.000000000000 100.000000000000
domain_check topo
= 18.1126670837402 1798.10461425781
domain_check area = 3600.00000000000 3600.00000000000
domain_check pftm = 1 1
Reading in urban input data from surface data file ...
UrbanInput input//recm45_CLM45_surface.nc
Sucessfully read urban input data
Attempting to read PFT physiological data .....
Successfully read PFT physiological data
Attempting to read surface boundary data .....
Checked LAT/LON compliance
Successfully read surface boundary data
Surface Grid Characteristics
total number of gridcells = 11712
total number of landunits = 24369
total number of columns = 39779
total number of pfts = 202977
---clm_ptrs_check:
clm_ptrs_check: g index ranges - OK
clm_ptrs_check: l index ranges - OK
clm_ptrs_check: c index ranges - OK
clm_ptrs_check: p index ranges - OK
clm_ptrs_check: g mono increasing - OK
clm_ptrs_check: l mono increasing - OK
clm_ptrs_check: c mono increasing - OK
clm_ptrs_check: p mono increasing - OK
clm_ptrs_check: tree consistent - OK
Attempting to initialize time invariant variables
Attempting to read soil color, sand and clay boundary data .....
WARNING:: ETALAKE not found on surface data set.
All lake columns will have eta set equal to default value
WARNING:: LAKEFETCH not found on surface data set.
All lake columns will have fetch set equal to default value
Successfully read fmax, soil color, sand and clay boundary data
Attempting to read organic matter data .....
organicrd input//recm45_CLM45_surface.nc
Successfully read organic matter data
# zsoi #
0.710E-02 0.279E-01 0.623E-01
0.119 0.212 0.366 0.620
1.04 1.73 2.86 4.74 7.83 12.9 21.3
21.3 35.2
# zisoi #
0.00 0.175E-01 0.451E-01 0.906E-01 0.166 0.289 0.493
0.829
1.38 2.30 3.80 6.28 10.4 17.1
17.1 28.3 42.1
# dzsoi #
0.175E-01 0.276E-01 0.455E-01 0.750E-01 0.124 0.204 0.336
0.554 0.913 1.51 2.48 4.09 6.75 11.1
11.1 13.9
dzsoi_decomp 1.00000000000000
Set 20 100% special land-units points to zero slope
Set 25 100% special land-units points to zero slope
Set 32 100% special land-units points to zero slope
Set 28 100% special land-units points to zero slope
Attempting to read snow optical properties .....
SnowOptics_init
/home/talabi/REGCM/regcmglobal_dat/CLM45/snicardata/snicar_optics_5bnd_c090915.
nc
Successfully read snow optical properties
Attempting to read snow aging parameters .....
Successfully read snow aging properties
Successfully initialized time invariant variables
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
regcmMPI_clm45 0000000000E8FAB7 Unknown Unknown Unknown
regcmMPI_clm45 0000000000C0EEFF
Unknown Unknown Unknown
regcmMPI_clm45 0000000000BF5B0D Unknown Unknown Unknown
regcmMPI_clm45 0000000000454EAD Unknown Unknown Unknown
regcmMPI_clm45 00000000005101A6 Unknown
Unknown Unknown
regcmMPI_clm45 000000000040C435 Unknown Unknown Unknown
regcmMPI_clm45 0000000000671739 Unknown Unknown Unknown
regcmMPI_clm45 000000000040BE0C Unknown Unknown Unknown
libc.so.6 00002B868C1C1DE5 Unknown Unknown Unknown
regcmMPI_clm45 000000000040BD09 Unknown Unknown Unknown
CLM_hist_printflds : number of master fields = 240
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= PID 4791 RUNNING AT
talabi-ThinkPad-X230
= EXIT CODE: 174
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
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