[RegCNET] branch make error

James Ciarlo` james.ciarlo at physics.org
Tue Jan 8 11:42:24 CET 2013


Dear RegCNETers,

I have made a copy of the regcm-core using 'svn copy' and am trying to get
that copy working.

I used the following commands:
$> bootstrap.sh
$> ./configure CC=icc FC=ifort --with-netcdf=<path_to-netcdf_install>/
$> make

Once I use the make command, I am getting the following error.

: catastrophic error: **Internal compiler error: segmentation violation
signal
raised** Please report this error along with the circumstances in which it
occurred in a Software Problem Report.  Note: File and line given may not be
explicit cause of this error.

compilation aborted for mod_ncout.F90 (code 3)
make[3]: *** [mod_ncout.o] Error 3
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1

I had used the same system to install a previous version of the program
only a few months ago. I removed it and updated the system in order to try
out the current version with the current chemistry set up.

I have attached the output of the make command including the error

Can anyone help me solve this issue please?

Regards,
James
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make  all-recursive
make[1]: Entering directory `/home/regcm/Code/regcm/branches/regcm-chem-soa'
Making all in external
make[2]: Entering directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/external'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/external'
Making all in Share
make[2]: Entering directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/Share'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/Share'
Making all in PreProc
make[2]: Entering directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc'
Making all in Terrain
make[3]: Entering directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/Terrain'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/Terrain'
Making all in ICBC
make[3]: Entering directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/ICBC'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/ICBC'
Making all in CLM
make[3]: Entering directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/CLM'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/CLM'
Making all in CH_EMISSIONS
make[3]: Entering directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/CH_EMISSIONS'
Making all in interpolation
make[4]: Entering directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/CH_EMISSIONS/interpolation'
Making all in tools
make[5]: Entering directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/CH_EMISSIONS/interpolation/tools'
Making all in REGCM_grid
make[6]: Entering directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/CH_EMISSIONS/interpolation/tools/REGCM_grid'
make[6]: Nothing to be done for `all'.
make[6]: Leaving directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/CH_EMISSIONS/interpolation/tools/REGCM_grid'
make[6]: Entering directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/CH_EMISSIONS/interpolation/tools'
make[6]: Nothing to be done for `all-am'.
make[6]: Leaving directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/CH_EMISSIONS/interpolation/tools'
make[5]: Leaving directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/CH_EMISSIONS/interpolation/tools'
make[5]: Entering directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/CH_EMISSIONS/interpolation'
make[5]: Nothing to be done for `all-am'.
make[5]: Leaving directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/CH_EMISSIONS/interpolation'
make[4]: Leaving directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/CH_EMISSIONS/interpolation'
make[4]: Entering directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/CH_EMISSIONS'
make[4]: Nothing to be done for `all-am'.
make[4]: Leaving directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/CH_EMISSIONS'
make[3]: Leaving directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc/CH_EMISSIONS'
make[3]: Entering directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc'
make[2]: Leaving directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/PreProc'
Making all in Main
make[2]: Entering directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/Main'
Making all in mpplib
make[3]: Entering directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/Main/mpplib'
mpif90 -I/home/regcm/Code/regcm/branches/regcm-chem-soa/external -I/home/regcm/RegCM-4.2/Utils/netcdf_install//include -I/home/regcm/RegCM-4.2/Utils/netcdf_install//include  -I/home/regcm/Code/regcm/branches/regcm-chem-soa/Share -O3 -fp-model fast=2 -ip -convert big_endian -assume byterecl -heap-arrays -c mod_ncout.F90
make[3]: Leaving directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/Main/mpplib'
make[2]: Leaving directory `/home/regcm/Code/regcm/branches/regcm-chem-soa/Main'
make[1]: Leaving directory `/home/regcm/Code/regcm/branches/regcm-chem-soa'
: catastrophic error: **Internal compiler error: segmentation violation signal
raised** Please report this error along with the circumstances in which it
occurred in a Software Problem Report.  Note: File and line given may not be
explicit cause of this error.

compilation aborted for mod_ncout.F90 (code 3)
make[3]: *** [mod_ncout.o] Error 3
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2



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