[RegCNET] error in parallel run
rajesh j
illallo at yahoo.com
Thu Oct 29 12:58:20 CET 2009
Hi All,
While trying to run RegCM3 on a Linux Cluster with 8 processors, the
following error message came. I could not resolve it. Please give a
mention if anybody is familiar with this. Earlier I have installed the
evaluation version of MPI from intel site successfully. The error
message is given below. Thank you in advance
...............................................................................
Common2/split.cb(53): warning #6375: Because of COMMON, the alignment of object is inconsistent with its type [G1]
real*8 g1
--------------^
Common2/split.cb(54): warning #6375: Because of COMMON, the alignment of object is inconsistent with its type [G2]
real*8 g2
--------------^
Common2/split.cb(55): warning #6375: Because of COMMON, the alignment of object is inconsistent with its type [G3]
real*8 g3
--------------^
Common2/split.cb(56): warning #6375: Because of COMMON, the alignment of object is inconsistent with its type [W3]
real*8 w3
--------------^
Common2/split.cb(57): warning #6375: Because of COMMON, the alignment
of object is inconsistent with its type [THETAH]
real*8 thetah
--------------^
Common2/split.cb(58): warning #6375: Because of COMMON, the alignment
of object is inconsistent with its type [TBARF]
real*8 tbarf
--------------^
Common2/split.cb(59): warning #6375: Because of COMMON, the alignment
of object is inconsistent with its type [THETAF]
real*8 thetaf
--------------^
Common2/split.cb(60): warning #6375: Because of COMMON, the alignment
of object is inconsistent with its type [TWEIGH]
real*8 tweigh
--------------^
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o spline.o spline.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o splitf.o splitf.f
Common2/split.cb(53): warning #6375: Because of COMMON, the alignment of object is inconsistent with its type [G1]
real*8 g1
--------------^
Common2/split.cb(54): warning #6375: Because of COMMON, the alignment of object is inconsistent with its type [G2]
real*8 g2
--------------^
Common2/split.cb(55): warning #6375: Because of COMMON, the alignment of object is inconsistent with its type [G3]
real*8 g3
--------------^
Common2/split.cb(56): warning #6375: Because of COMMON, the alignment of object is inconsistent with its type [W3]
real*8 w3
--------------^
Common2/split.cb(57): warning #6375: Because of COMMON, the alignment
of object is inconsistent with its type [THETAH]
real*8 thetah
--------------^
Common2/split.cb(58): warning #6375: Because of COMMON, the alignment
of object is inconsistent with its type [TBARF]
real*8 tbarf
--------------^
Common2/split.cb(59): warning #6375: Because of COMMON, the alignment
of object is inconsistent with its type [THETAF]
real*8 thetaf
--------------^
Common2/split.cb(60): warning #6375: Because of COMMON, the alignment
of object is inconsistent with its type [TWEIGH]
real*8 tweigh
--------------^
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o sponge.o sponge.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o spstep.o spstep.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o sscal.o sscal.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o sswap.o sswap.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o stomat.o stomat.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o TEMP.o TEMP.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o tend.o tend.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o tgrund.o tgrund.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o tpfc.o tpfc.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o tracbud.o tracbud.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o tracdiag.o tracdiag.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o tractend2.o tractend2.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o trcab.o trcab.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o trcabn.o trcabn.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o trcems.o trcems.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o trcmix.o trcmix.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o trcplk.o trcplk.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o trcpth.o trcpth.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o tseice.o tseice.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o tstep.o tstep.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o vadv.o vadv.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o vcheke.o vcheke.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o vcheki.o vcheki.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o vchekt.o vchekt.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o vcover.o vcover.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o vecbats.o vecbats.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o vmodes.o vmodes.f
Common2/split.cb(53): warning #6375: Because of COMMON, the alignment of object is inconsistent with its type [G1]
real*8 g1
--------------^
Common2/split.cb(54): warning #6375: Because of COMMON, the alignment of object is inconsistent with its type [G2]
real*8 g2
--------------^
Common2/split.cb(55): warning #6375: Because of COMMON, the alignment of object is inconsistent with its type [G3]
real*8 g3
--------------^
Common2/split.cb(56): warning #6375: Because of COMMON, the alignment of object is inconsistent with its type [W3]
real*8 w3
--------------^
Common2/split.cb(57): warning #6375: Because of COMMON, the alignment
of object is inconsistent with its type [THETAH]
real*8 thetah
--------------^
Common2/split.cb(58): warning #6375: Because of COMMON, the alignment
of object is inconsistent with its type [TBARF]
real*8 tbarf
--------------^
Common2/split.cb(59): warning #6375: Because of COMMON, the alignment
of object is inconsistent with its type [THETAF]
real*8 thetaf
--------------^
Common2/split.cb(60): warning #6375: Because of COMMON, the alignment
of object is inconsistent with its type [TWEIGH]
real*8 tweigh
--------------^
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o vmultm.o vmultm.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o vnorml.o vnorml.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o vorder.o vorder.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o vprntm.o vprntm.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o vprntv.o vprntv.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o vtlaps.o vtlaps.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o water.o water.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o wheneq.o wheneq.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o whenfgt.o whenfgt.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o whenflt.o whenflt.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o whenne.o whenne.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o zengocndrv.o zengocndrv.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o zengocn.o zengocn.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o zenith.o zenith.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -convert big_endian -c -o zenitm.o zenitm.f
/opt/intel/impi/3.2.2.006//bin64/mpiifort -o regcm -convert big_endian
aermix.o aeroppt.o aerout.o albedov.o balanc.o balbak.o bconst.o
bdyin.o bdyuv.o bdyval.o blhnew.o BLOCKDATA001.o bmpara.o bndry.o
carbon.o cdiv.o chdrydep.o chemtap.o chrsetc.o chsrfem.o cldefr.o
cldems.o cldfrac.o co2.o colmod3.o conadv.o condch.o condcq.o condtq.o
conmas.o cumtran.o cupara.o cuparan.o cup.o cupemandrv.o cupeman.o
depth.o deriv.o diffu.o diffut.o dragdn.o drag.o drip.o dsflx.o EDDY.o
elmhes.o eltran.o eomb.o FINDDATE.o for_next.o frawat.o getdat.o
grads_stuf.o hadv.o holtbl.o hqr2.o hqr.o htdiff.o ice.o inirad.o
initb.o INITDATE.o init.o inidust.o initlk.o interf.o intmax.o
invmtrx.o isamax.o isrchfgt.o isrchfle.o lakedrv.o lake.o lenchr.o
lfdrag.o lftemp.o ljchrn.o lshfch.o lutbl.o mapsmp.o maximi.o minimi.o
MIXER.o mkfile.o nconvp.o nudge.o o3data.o outprt.o output.o outsav.o
outsrf.o outsub.o outtap0.o outtap.o param.o pcp.o radabs.o radclr.o
radclw.o radcsw.o radctl.o radded.o radems.o radini.o radinp.o radout.o
radoz2.o radtap.o radtpl.o reorder.o regcm.o resetr.o rg.o root.o
satur.o saxpy.o sgedi.o sgefa.o slice.o slice3d.o snow.o soilbc.o
solar1.o spinit.o spline.o splitf.o sponge.o spstep.o sscal.o sswap.o
stomat.o TEMP.o tend.o tgrund.o tpfc.o tracbud.o tracdiag.o tractend2.o
trcab.o trcabn.o trcems.o trcmix.o trcplk.o trcpth.o tseice.o tstep.o
vadv.o vcheke.o vcheki.o vchekt.o vcover.o vecbats.o vmodes.o vmultm.o
vnorml.o vorder.o vprntm.o vprntv.o vtlaps.o water.o wheneq.o whenfgt.o
whenflt.o whenne.o zengocndrv.o zengocn.o zenith.o zenitm.o -static
ifort: command line warning #10006: ignoring unknown option '-Msignextend'
ifort: command line warning #10006: ignoring unknown option '-Mcray=pointer'
ifort: command line warning #10159: invalid argument for option '-tp'
ifort: command line warning #10006: ignoring unknown option '-Mnoframe'
ifort: command line warning #10006: ignoring unknown option '-fastsse'
/opt/intel/impi/3.2.2.006/lib64/libmpi.a(simple_fpmi.o)(.text+0x429): In function `PMI_Init':
: warning: Using 'dlopen' in statically linked applications requires at
runtime the shared libraries from the glibc version used for linking
/opt/intel/impi/3.2.2.006/lib64/libmpi.a(rdma_iba_util.o)(.text+0x22b): In function `MPIDI_CH3I_RDMA_util_get_ia_addr':
: warning: Using 'getaddrinfo' in statically linked applications
requires at runtime the shared libraries from the glibc version used
for linking
/opt/intel/impi/3.2.2.006/lib64/libmpi.a(sock.o)(.text+0x400c): In function `MPIDU_Sock_get_host_description':
: warning: Using 'gethostbyaddr' in statically linked applications
requires at runtime the shared libraries from the glibc version used
for linking
/opt/intel/impi/3.2.2.006/lib64/libmpi.a(simple_pmi.o)(.text+0x30e3): In function `iPMI_Init':
: warning: Using 'gethostbyname' in statically linked applications
requires at runtime the shared libraries from the glibc version used
for linking
The number of CPU is not well set
NCPU
=
1 nproc
= 8
[unset]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 0) - process 0
[user at cluster Run-parallel]$
Mr. Rajesh J.
Junior Research Fellow,
Department of Atmospheric Sciences,
School of Marine Sciences,
Cochin University of Science and Technology, Lakeside Campus,
Finearts Avenue, Cochin 682016
Phone: 9846812663
e-mail: rajeshj at cusat.ac.in
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