bin/sh ./config.status --recheck

running CONFIG_SHELL=/bin/sh /bin/sh ./configure CC=gcc FC=gfortran CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe LDFLAGS=-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs CPPFLAGS=-D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 --no-create --no-recursion

checking build system type... x86_64-apple-darwin18.7.0

checking host system type... x86_64-apple-darwin18.7.0

checking how to print strings... printf

checking for gcc... gcc

checking whether the C compiler works... yes

checking for C compiler default output file name... a.out

checking for suffix of executables... 

checking whether we are cross compiling... no

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking whether gcc understands -c and -o together... yes

checking for a sed that does not truncate output... /usr/bin/sed

checking for grep that handles long lines and -e... /usr/bin/grep

checking for egrep... /usr/bin/grep -E

checking for fgrep... /usr/bin/grep -F

checking for ld used by gcc... /Users/mada0007/anaconda3/bin/x86_64-apple-darwin13.4.0-ld

checking if the linker (/Users/mada0007/anaconda3/bin/x86_64-apple-darwin13.4.0-ld) is GNU ld... no

checking for BSD- or MS-compatible name lister (nm)... /Users/mada0007/anaconda3/bin/x86_64-apple-darwin13.4.0-nm

checking the name lister (/Users/mada0007/anaconda3/bin/x86_64-apple-darwin13.4.0-nm) interface... BSD nm

checking whether ln -s works... yes

checking the maximum length of command line arguments... 196608

checking how to convert x86_64-apple-darwin18.7.0 file names to x86_64-apple-darwin18.7.0 format... func_convert_file_noop

checking how to convert x86_64-apple-darwin18.7.0 file names to toolchain format... func_convert_file_noop

checking for /Users/mada0007/anaconda3/bin/x86_64-apple-darwin13.4.0-ld option to reload object files... -r

checking for objdump... objdump

checking how to recognize dependent libraries... pass_all

checking for dlltool... no

checking how to associate runtime and link libraries... printf %s\n

checking for archiver @FILE support... no

checking for strip... /Users/mada0007/anaconda3/bin/x86_64-apple-darwin13.4.0-strip

checking for ranlib... /Users/mada0007/anaconda3/bin/x86_64-apple-darwin13.4.0-ranlib

checking for gawk... no

checking for mawk... no

checking for nawk... no

checking for awk... awk

checking command to parse /Users/mada0007/anaconda3/bin/x86_64-apple-darwin13.4.0-nm output from gcc object... ok

checking for sysroot... no

checking for a working dd... /bin/dd

checking how to truncate binary pipes... /bin/dd bs=4096 count=1

checking for mt... no

checking if : is a manifest tool... no

checking for dsymutil... dsymutil

checking for nmedit... /Users/mada0007/anaconda3/bin/x86_64-apple-darwin13.4.0-nmedit

checking for lipo... /Users/mada0007/anaconda3/bin/x86_64-apple-darwin13.4.0-lipo

checking for otool... /Users/mada0007/anaconda3/bin/x86_64-apple-darwin13.4.0-otool

checking for otool64... no

checking for -single_module linker flag... yes

checking for -exported_symbols_list linker flag... yes

checking for -force_load linker flag... no

checking how to run the C preprocessor... gcc -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for dlfcn.h... yes

checking for objdir... .libs

checking if gcc supports -fno-rtti -fno-exceptions... yes

checking for gcc option to produce PIC... -fno-common -DPIC

checking if gcc PIC flag -fno-common -DPIC works... yes

checking if gcc static flag -static works... no

checking if gcc supports -c -o file.o... yes

checking if gcc supports -c -o file.o... (cached) yes

checking whether the gcc linker (/Users/mada0007/anaconda3/bin/x86_64-apple-darwin13.4.0-ld) supports shared libraries... yes

checking dynamic linker characteristics... darwin18.7.0 dyld

checking how to hardcode library paths into programs... immediate

checking whether stripping libraries is possible... yes

checking if libtool supports shared libraries... yes

checking whether to build shared libraries... yes

checking whether to build static libraries... yes

checking for a BSD-compatible install... /usr/bin/install -c

checking whether build environment is sane... yes

checking for a thread-safe mkdir -p... ./install-sh -c -d

checking whether make sets $(MAKE)... yes

checking whether make supports the include directive... yes (GNU style)

checking whether make supports nested variables... yes

checking dependency style of gcc... gcc3

checking for ranlib... (cached) /Users/mada0007/anaconda3/bin/x86_64-apple-darwin13.4.0-ranlib

checking for gcc... (cached) gcc

checking whether we are using the GNU C compiler... (cached) yes

checking whether gcc accepts -g... (cached) yes

checking for gcc option to accept ISO C89... (cached) none needed

checking whether gcc understands -c and -o together... (cached) yes

checking whether we are using the GNU Fortran compiler... yes

checking whether gfortran accepts -g... yes

checking if libtool supports shared libraries... yes

checking whether to build shared libraries... yes

checking whether to build static libraries... yes

checking for gfortran option to produce PIC... -fno-common

checking if gfortran PIC flag -fno-common works... yes

checking if gfortran static flag -static works... no

checking if gfortran supports -c -o file.o... yes

checking if gfortran supports -c -o file.o... (cached) yes

checking whether the gfortran linker (/Users/mada0007/anaconda3/bin/x86_64-apple-darwin13.4.0-ld) supports shared libraries... yes

checking dynamic linker characteristics... darwin18.7.0 dyld

checking how to hardcode library paths into programs... immediate

checking if nf-config program is present... no

checking if nc-config program is present... yes

checking whether byte ordering is bigendian... no

checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore

configure: checking for NetCDF...

configure: checking for netcdf.h...

checking netcdf.h usability... yes

checking netcdf.h presence... yes

checking for netcdf.h... yes

configure: checking for libnetcdf.a...

checking for nc_close in -lnetcdf... yes

configure: checking for libnetcdff.a...

checking for nf_close in -lnetcdf... no

configure: checking for libnetcdff.a...

checking for nf_close in -lnetcdff... yes

configure: checking for NetCDF module file...

checking for mpifort... mpifort

checking for MPI_Init... no

checking for MPI_Init in -lfmpi... no

checking for MPI_Init in -lmpichf90... no

checking for MPI_Init in -lmpi... no

checking for MPI_Init in -lmpich... no

checking that generated files are newer than configure... done

configure: creating ./config.status

 /bin/sh ./config.status

config.status: creating Makefile

config.status: creating external/Makefile

config.status: creating Share/Makefile

config.status: creating PreProc/Makefile

config.status: creating PreProc/Terrain/Makefile

config.status: creating PreProc/ICBC/Makefile

config.status: creating PreProc/CH_EMISSIONS/Makefile

config.status: creating PreProc/CH_EMISSIONS/interpolation/Makefile

config.status: creating PreProc/CH_EMISSIONS/interpolation/tools/Makefile

config.status: creating PreProc/CH_EMISSIONS/interpolation/tools/REGCM_grid/Makefile

config.status: creating PreProc/CLM/Makefile

config.status: creating PreProc/CLM45/Makefile

config.status: creating PostProc/Makefile

config.status: creating Main/mpplib/Makefile

config.status: creating Main/netlib/Makefile

config.status: creating Main/Makefile

config.status: creating Main/batslib/Makefile

config.status: creating Main/clmlib/Makefile

config.status: creating Main/ocnlib/Makefile

config.status: creating Main/clmlib/clm4.5/Makefile

config.status: creating Main/chemlib/Makefile

config.status: creating Main/chemlib/GAS_CBMZ_NEW/Makefile

config.status: creating Main/cumlib/Makefile

config.status: creating Main/radlib/Makefile

config.status: creating Main/radlib/RRTMG_SW/Makefile

config.status: creating Main/pbllib/Makefile

config.status: creating Tools/Programs/CheckSun/Makefile

config.status: creating Tools/Programs/RegCM_read/Makefile

config.status: creating Tools/Programs/timeseries/Makefile

config.status: creating config.h

config.status: config.h is unchanged

config.status: executing libtool commands

config.status: executing depfiles commands

Making install in external

make[1]: Entering directory '/Users/mada0007/Documents/softwares/RegCM-4.5.0/external'

make[2]: Entering directory '/Users/mada0007/Documents/softwares/RegCM-4.5.0/external'

make[2]: Nothing to be done for 'install-exec-am'.

make[2]: Nothing to be done for 'install-data-am'.

make[2]: Leaving directory '/Users/mada0007/Documents/softwares/RegCM-4.5.0/external'

make[1]: Leaving directory '/Users/mada0007/Documents/softwares/RegCM-4.5.0/external'

Making install in Share

make[1]: Entering directory '/Users/mada0007/Documents/softwares/RegCM-4.5.0/Share'

make[2]: Entering directory '/Users/mada0007/Documents/softwares/RegCM-4.5.0/Share'

make[2]: Nothing to be done for 'install-exec-am'.

make[2]: Nothing to be done for 'install-data-am'.

make[2]: Leaving directory '/Users/mada0007/Documents/softwares/RegCM-4.5.0/Share'

make[1]: Leaving directory '/Users/mada0007/Documents/softwares/RegCM-4.5.0/Share'

Making install in PreProc

make[1]: Entering directory '/Users/mada0007/Documents/softwares/RegCM-4.5.0/PreProc'

Making install in Terrain

make[2]: Entering directory '/Users/mada0007/Documents/softwares/RegCM-4.5.0/PreProc/Terrain'

/bin/sh ../../libtool  --tag=FC   --mode=link gfortran  -O3 -mtune=native -march=native -fconvert=big-endian -fno-range-check -finline-functions -L/Users/mada0007/Documents/softwares/RegCM-4.5.0/external   -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -o terrain mod_header.o mod_block.o mod_fudge.o mod_maps.o mod_write.o mod_smooth.o mod_maputils.o mod_intldtr.o mod_rdldtr.o mod_moist.o terrain.o  -L/Users/mada0007/Documents/softwares/RegCM-4.5.0/Share -lrcmlib -lnetcdff  -L/usr/local/Cellar/netcdf/4.7.4/lib -lnetcdf

libtool: link: gfortran -O3 -mtune=native -march=native -fconvert=big-endian -fno-range-check -finline-functions -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -o terrain mod_header.o mod_block.o mod_fudge.o mod_maps.o mod_write.o mod_smooth.o mod_maputils.o mod_intldtr.o mod_rdldtr.o mod_moist.o terrain.o  -L/Users/mada0007/Documents/softwares/RegCM-4.5.0/external -L/Users/mada0007/Documents/softwares/RegCM-4.5.0/Share -lrcmlib -lnetcdff -L/usr/local/Cellar/netcdf/4.7.4/lib -lnetcdf

collect2: fatal error: ld terminated with signal 11 [Segmentation fault: 11]

compilation terminated.

ld: archive has no table of contents file '/Users/mada0007/Documents/softwares/RegCM-4.5.0/Share/librcmlib.a' for architecture x86_64

make[2]: *** [Makefile:400: terrain] Error 1

make[2]: Leaving directory '/Users/mada0007/Documents/softwares/RegCM-4.5.0/PreProc/Terrain'

make[1]: *** [Makefile:385: install-recursive] Error 1

make[1]: Leaving directory '/Users/mada0007/Documents/softwares/RegCM-4.5.0/PreProc'

make: *** [Makefile:431: install-recursive] Error 1