I am trying to set up RegCM4.5 in HPC. All the binaries are getting created. However, when I am running TERRAIN for the test case the netdcf file test_001_DOMAIN000.nc is not getting created, although the ascii LANDUSE file is getting created. The program is terminating with Segmentation fault. As a test, I have also set up the model in my Desktop (where terrain can generate the netcdf file). When I copy the netcdf  output generated by TERRAIN from desktop to the HPC, SST and ICBC are running in the HPC and generating input files and also the model is running. So, something is happening with TERRAIN in the HPC which I am unable to figure out.

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The message that I am getting on running TERRAIN in the HPC is:

  This is Terrain part of RegCM package version 4
   SVN Revision: 4.5.0 compiled at: data : Jun 24 2016  time: 16:30:58

 : this run start at  : 2016-06-24 16:38:55+0530
 : it is submitted by : pbanerjee
 : it is running on   : mandhan.caos.iisc.ernet.in
 : in directory       : /home/pbanerjee/REGCM4.5/REGCM_RUN
                     
 Vertical Grid Description
 
 -----------------------------------------
 k        sigma       p(mb)           z(m)
 -----------------------------------------
 19       1.000     1013.25          0.00
 18       0.990     1003.62         80.95
 17       0.980      993.99        162.69
 16       0.960      974.72        329.40
 15       0.930      945.82        587.10
 14       0.890      907.29        945.29
 13       0.840      859.13       1418.14
 12       0.780      801.34       2026.47
 11       0.710      733.91       2801.40
 10       0.630      656.85       3790.93
  9       0.550      579.79       4911.99
  8       0.470      502.73       6204.88
  7       0.390      425.67       7731.83
  6       0.310      348.61       9596.31
  5       0.230      271.55      11989.90
  4       0.160      204.12      14776.13
  3       0.100      146.32      18107.61
  2       0.050       98.16      22245.98
  1       0.000       50.00      30370.64
 
 Doing Horizontal Grid with following parameters
 iy     =           34
 jx     =           64
 ds     =    60.000000000000000    
 clat   =    45.390000000000001    
 clon   =    13.480000000000000    
 iproj  = LAMCON
 Grid setup done
 Geo mapping done
 Calculated large extrema:
          MINLAT =    34.000000000000000    
          MAXLAT =    55.000000000000000    
          MINLON =   -15.000000000000000    
          MAXLON =    43.000000000000000    
 Determined Grid coordinate range
 Using resampling at           15  minutes.
 Opening /home/pbanerjee/REGCM4.5/REGCM_GLOBEDAT/SURFACE/GMTED_DEM_30s.nc
 Resampling........ Done.
 Static DEM data successfully read in
 Interpolated DEM on model GRID
 Opening /home/pbanerjee/REGCM4.5/REGCM_GLOBEDAT/SURFACE/GLCC_BATS_30s.nc
 Resampling........ Done.
 Static landcover BATS data successfully read in
 Interpolated landcover on model GRID
 Fudging data (if requested) succeeded
  Skip moisture creation, no moisture file to read
Segmentation fault
************************************************************************************************************

I have tried changing the ulimit and that is not helping. I am getting the following output on running terrainDEBUG:

***************************************************************************************************************
 Doing Horizontal Grid with following parameters
 iy     =           34
 jx     =           64
 ds     =    60.000000000000000    
 clat   =    45.390000000000001    
 clon   =    13.480000000000000    
 iproj  = LAMCON
 Grid setup done
 Geo mapping done
 Calculated large extrema:
          MINLAT =    34.000000000000000    
          MAXLAT =    55.000000000000000    
          MINLON =   -15.000000000000000    
          MAXLON =    43.000000000000000    
 Determined Grid coordinate range
 Using resampling at           15  minutes.
 INPSEC =          120
 IOPSEC =            4
 BOUNDS IN LAT:    33.995833333333330        55.004166666666670    
 BOUNDS IN LON:   -15.004166666666666        43.004166666666670    
 WILL READ         6962 x        2522  points
 WILL GIVE          233 x          85  points
 Opening /home/pbanerjee/REGCM4.5/REGCM_GLOBEDAT/SURFACE/GMTED_DEM_30s.nc
 Resampling........ Done.
 Static DEM data successfully read in
 Interpolated DEM on model GRID
 INPSEC =          120
 IOPSEC =            4
 BOUNDS IN LAT:    33.995833333333330        55.004166666666670    
 BOUNDS IN LON:   -15.004166666666666        43.004166666666670    
 WILL READ         6962 x        2522  points
 WILL GIVE          233 x          85  points
 Opening /home/pbanerjee/REGCM4.5/REGCM_GLOBEDAT/SURFACE/GLCC_BATS_30s.nc
 Resampling........ Done.
 Static landcover BATS data successfully read in
 Interpolated landcover on model GRID
 Fudging data (if requested) succeeded
 Skip moisture creation, no moisture file to read
 In File mod_ncstream.F90 at line:          314
 NetCDF: Not a valid ID                                                         
 nc_stream : Cannot close file P �S� 0����4T
Q ��� M5�yV ( � Y `��� 0���+�5=    ����0����랕�*`����
b�5=F�5=���P�U 3�5)@�U�*:            1
Aborted
*****************************************************************************************************************

===> My system info is : 
CentOS release 5.6 (Final)
Kernel \r on an \m

Linux mandhan.caos.iisc.ernet.in 2.6.18-238.el5 #1 SMP Thu Jan 13 15:51:15 EST 2011 x86_64 x86_64 x86_64 GNU/Linux

===> I am using GCC version 4.6.2. openmpi version  1.10.2, zlib-1.2.8, hdf5-1.8.12, netcdf-4.3.3.1 and netcdf-fortran 4.4.2.

I am attaching the RegCM4.5 config log file. Please help me to overcome this problem.