[RegCNET] regcm in cray
priyanka banerjee
pbanerjee.ocean at gmail.com
Thu Nov 23 13:59:42 CET 2017
Hello,
I am trying to install RegCM4.5 in our Cray XC40. There is no issue with
the preprocessing steps. However, when I am submitting a run the model
stops within a minute and I get the following error message:
[NID 01409] 2017-11-16 14:52:44 Apid 77755: initiated application
termination
[NID 01409] 2017-11-16 14:52:44 Apid 77755: OOM killer terminated this
process.
It means that the code has exhausted the memory available on the node (OOM
stands for
"out of memory").
Some details about the model set-up are given below:
I have loaded the modules PrgEnv-intel, cray-netcdf, cray-hdf5,cary-mpich
and pbs.
My domain information : iy = 176,
jx = 240,
kz = 18,
ds= 30.0,
dt = 45.,
The script that I am using to submit job is:
#!/bin/csh
#PBS -N test
#PBS -l select=5:ncpus=24
#PBS -l walltime=02:00:00
#PBS -l place=scatter
#PBS -l accelerator_type="None"
#PBS -S /bin/csh -V
. /opt/modules/default/init/csh
cd /to/the/run/folder
aprun -j 1 -n 120 -N 24 /regcm/build/folder/regcmMPI test.in > outfile
Any thoughts on how to overcome this issue?
Thanks a lot .............. Priyanka
~
--
Priyanka Banerjee
Project Scientist
Centre for Atmospheric and Oceanic Sciences
Indian Institute of Science
Bangalore, India
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