[RegCNET] Bugs fixed in RegCM4.2 with CLM option

[Guangshan Chen]

Dear Phan Van Tan,

This error is caused by the Bug 4.

I made a patch for you. 

Please cd to where_you_put_code/PreProc/CLM/clm2rcm.F90, put this patch file there,
and then use the command to patch
patch -p0 -i clm2rcm.F90

Guangshan
CCR, UW-Madison




On Apr 20, 2012, at 10:35 PM, Phan Van Tan wrote:

> Dear Guangshan Chen,
> Following your instructions (except Bug 4, which I could not do as you say), I have compiled model successfully. But when running model the following errors occur.
> Could you please share your experiences to debug.
> Thanks.
> -------------------
>  Successfully initialized clm2 history files
> ------------------------------------------------------------
>  Successfully initialized the land model
>  begin initial run at:
>     nstep=            0  year=         2012  month=            1  day=
>            9  seconds=            0
> 
> ************************************************************
> 
>  Attempting to read monthly vegetation data .....
>  nstep =            0  month =            1  day =            9
>  (GETFIL): attempting to find local file SMALL_RCMlai.nc
>  (GETFIL): using input//SMALL_RCMlai.nc
> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0[cli_0]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0
>  netcdf error from readMonthlyVegetation
>  netcdf strerror = NetCDF: Index exceeds dimension bound
>  ENDRUN: called without a message string
> rank 0 in job 1  compute-0-0.local_35795   caused collective abort of all ranks
>   exit status of rank 0: killed by signal 9
> -------------------
> 
> --- On Wed, 4/18/12, Guangshan Chen <gchen9 at gmail.com> wrote:
> 
> From: Guangshan Chen <gchen9 at gmail.com>
> Subject: [RegCNET] Bugs fixed in RegCM4.2 with CLM option
> To: regcnet at lists.ictp.it
> Cc: "val bennington" <benesh at wisc.edu>, "Steve Vavrus" <sjvavrus at wisc.edu>, "pat behling" <pbehling at wisc.edu>
> Date: Wednesday, April 18, 2012, 7:50 AM
> 
> Dear all, 
> 
> The following are the bugs fixed in RegCM4.2 with CLM opiton when I tested it.
> 
> 
> Bug 1: the types between lm and lmask are mismatched in mod_lm_interface.F90, line 112
> 
> Fix: Below line 106 add the follow line:
> 
> integer , pointer ,             dimension(:,:) :: lm_tmp
> 
> lm_tmp => lm
> 
> Change line 122 to
> 
> call assignpnt(lm_tmp,lmask)
> 
>  
> Bug 2: SST was the same for every month when using GISST in mod_sst_1deg.F90
> 
> Fix:  move line 153 “call split_idate(idate,year,month,day,hour)”  into the do-loop just below it. (Fixed by Bennington Valerie in CCR UW-Madison)
> 
> 
> Bug 3: There is no assigned value for the array “satbrt_clm” in surfrdMod.F90.patch
> 
> Fix: 
> 
> Step 1: Below line 129, define a new variable lndcatf in mod_bats_common.F90
> 
> real(dp) , pointer , dimension(:,:) :: lndcatf       ! mddom_io%lndcat chengs++
> 
>  
> Step 2: Below line 109, assign the value to lndcatf in mod_lm_interface.F90
> 
> call assignpnt(dom1%lndcat,lndcatf) ! chengs++
> 
>  
> Step 3: Change line 118 in mod_mtrxclm.F90 to the following:
> 
> use clm_varsur,    only : landmask , landfrac, satbrt_clm  ! chengs++ satbrt_clm
> 
>  
> allocate the array satbrt_clm after line 200:
> 
> if ( .not.allocated(satbrt_clm) ) allocate(satbrt_clm(iy,jx))  ! chengs++
> 
>  
> Assign the values for satbrt_clm from lndcaft below line  207:
> 
> satbrt_clm(i,j) = lndcatf(i,j)
> 
>  
> But 4: Monthly vegetation data XXX_RCMlai.nc only has one time slice in it. It should have 12 time slices.
> 
>  
> Fix:  According to the file of clm2rcm.F90 in RegCM-4.1.1 to change the value of "xhr"  in the do-loop at line 458 in clm2rcm.F90 in RegCM-4.2
> 
>  
> But 5: Calendar problem in CLM
> 
> Note: only Gregorian and noleap calendars can be used in CLM now.
> 
>  
> If you define Gregorian calendar in your regcm.in:
> 
> Step1: delete "#define NO_LEAP_CALENDAR"    in ESMF.inc 
> 
> Step 2: change “ESMF_CAL_GREGORIAN” in line 392 and line 410 to “GREGORIAN” in clm_time_manager.F90
> 
> 
> 
> Guangshan Chen
> Center for Climatic Research
> University of Wisconsin-Madison
> 
> -----Inline Attachment Follows-----
> 
> _______________________________________________
> RegCNET mailing list
> RegCNET at lists.ictp.it
> https://lists.ictp.it/mailman/listinfo.cgi/regcnet

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.ictp.it/pipermail/regcnet/attachments/20120423/24ae8000/attachment.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: clm2rcm.F90.patch
Type: application/octet-stream
Size: 2615 bytes
Desc: not available
URL: <https://lists.ictp.it/pipermail/regcnet/attachments/20120423/24ae8000/attachment.obj>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.ictp.it/pipermail/regcnet/attachments/20120423/24ae8000/attachment-0001.html>