[RegCNET] Re : Parallel run of RegCM3

Ernesto Verceles ernverceles at yahoo.com
Mon Mar 19 01:56:00 CET 2007


Dear RegCNeters,

I encountered a problem in running RegCM3.
(Debian/mpich2/IFC 9 machine)

ernie at research:~/RegCM/test$ ./regcm.x
rm -f aermix.o aeroppt.o aerout.o albedov.o balanc.o
balbak.o bconst.o bdyin.o bdyuv.o bdyval.o blhnew.o
BLOCKDATA001.o bmpara.o bndry.o carbon.o cdiv.o
chdrydep.o chemtap.o chrsetc.o chsrfem.o cldefr.o
cldems.o cldfrac.o co2.o colmod3.o conadv.o condch.o
condcq.o condtq.o conmas.o cumtran.o cupara.o
cuparan.o cup.o cupemandrv.o cupeman.o depth.o deriv.o
diffu.o diffut.o dragdn.o drag.o drip.o dsflx.o EDDY.o
elmhes.o eltran.o eomb.o FINDDATE.o for_next.o
frawat.o getdat.o grads_stuf.o hadv.o holtbl.o hqr2.o
hqr.o htdiff.o ice.o inirad.o initb.o INITDATE.o
init.o inidust.o initlk.o interf.o intmax.o invmtrx.o
isamax.o isrchfgt.o isrchfle.o lakedrv.o lake.o
lenchr.o lfdrag.o lftemp.o ljchrn.o lshfch.o lutbl.o
mapsmp.o maximi.o minimi.o MIXER.o mkfile.o nconvp.o
nudge.o o3data.o outprt.o output.o outsav.o outsrf.o
outsub.o outtap0.o outtap.o param.o pcp.o radabs.o
radclr.o radclw.o radcsw.o radctl.o radded.o radems.o
radini.o radinp.o radout.o radoz2.o radtap.o radtpl.o
reorder.o regcm.o resetr.o rg.o root.o satur.o saxpy.o
sgedi.o sgefa.o slice.o slice3d.o snow.o soilbc.o
solar1.o spinit.o spline.o splitf.o sponge.o spstep.o
sscal.o sswap.o stomat.o TEMP.o tend.o tgrund.o tpfc.o
tracbud.o tracdiag.o tractend2.o trcab.o trcabn.o
trcems.o trcmix.o trcplk.o trcpth.o tseice.o tstep.o
vadv.o vcheke.o vcheki.o vchekt.o vcover.o vecbats.o
vmodes.o vmultm.o vnorml.o vorder.o vprntm.o vprntv.o
vtlaps.o water.o wheneq.o whenfgt.o whenflt.o whenne.o
zengocndrv.o zengocn.o zenith.o zenitm.o regcm *.o
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o aermix.o aermix.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o aeroppt.o aeroppt.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o aerout.o aerout.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o albedov.o albedov.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o balanc.o balanc.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o balbak.o balbak.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o bconst.o bconst.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o bdyin.o bdyin.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o bdyuv.o bdyuv.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o bdyval.o bdyval.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o blhnew.o blhnew.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o BLOCKDATA001.o BLOCKDATA001.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o bmpara.o bmpara.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o bndry.o bndry.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o carbon.o carbon.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o cdiv.o cdiv.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o chdrydep.o chdrydep.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o chemtap.o chemtap.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o chrsetc.o chrsetc.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o chsrfem.o chsrfem.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o cldefr.o cldefr.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o cldems.o cldems.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o cldfrac.o cldfrac.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o co2.o co2.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o colmod3.o colmod3.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o conadv.o conadv.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o condch.o condch.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o condcq.o condcq.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o condtq.o condtq.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o conmas.o conmas.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o cumtran.o cumtran.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o cupara.o cupara.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o cuparan.o cuparan.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o cup.o cup.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o cupemandrv.o cupemandrv.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o cupeman.o cupeman.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o depth.o depth.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o deriv.o deriv.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o diffu.o diffu.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o diffut.o diffut.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o dragdn.o dragdn.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o drag.o drag.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o drip.o drip.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o dsflx.o dsflx.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o EDDY.o EDDY.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o elmhes.o elmhes.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o eltran.o eltran.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o eomb.o eomb.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o FINDDATE.o FINDDATE.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o for_next.o for_next.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o frawat.o frawat.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o getdat.o getdat.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o grads_stuf.o grads_stuf.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o hadv.o hadv.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o holtbl.o holtbl.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o hqr2.o hqr2.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o hqr.o hqr.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o htdiff.o htdiff.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o ice.o ice.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o inirad.o inirad.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o initb.o initb.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o INITDATE.o INITDATE.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o init.o init.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o inidust.o inidust.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o initlk.o initlk.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o interf.o interf.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o intmax.o intmax.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o invmtrx.o invmtrx.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o isamax.o isamax.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o isrchfgt.o isrchfgt.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o isrchfle.o isrchfle.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o lakedrv.o lakedrv.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o lake.o lake.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o lenchr.o lenchr.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o lfdrag.o lfdrag.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o lftemp.o lftemp.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o ljchrn.o ljchrn.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o lshfch.o lshfch.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o lutbl.o lutbl.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o mapsmp.o mapsmp.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o maximi.o maximi.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o minimi.o minimi.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o MIXER.o MIXER.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o mkfile.o mkfile.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o nconvp.o nconvp.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o nudge.o nudge.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o o3data.o o3data.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o outprt.o outprt.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o output.o output.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o outsav.o outsav.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o outsrf.o outsrf.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o outsub.o outsub.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o outtap0.o outtap0.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o outtap.o outtap.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o param.o param.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o pcp.o pcp.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o radabs.o radabs.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o radclr.o radclr.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o radclw.o radclw.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o radcsw.o radcsw.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o radctl.o radctl.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o radded.o radded.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o radems.o radems.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o radini.o radini.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o radinp.o radinp.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o radout.o radout.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o radoz2.o radoz2.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o radtap.o radtap.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o radtpl.o radtpl.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o reorder.o reorder.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o regcm.o regcm.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o resetr.o resetr.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o rg.o rg.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o root.o root.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o satur.o satur.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o saxpy.o saxpy.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o sgedi.o sgedi.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o sgefa.o sgefa.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o slice.o slice.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o slice3d.o slice3d.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o snow.o snow.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o soilbc.o soilbc.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o solar1.o solar1.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o spinit.o spinit.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o spline.o spline.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o splitf.o splitf.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o sponge.o sponge.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o spstep.o spstep.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o sscal.o sscal.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o sswap.o sswap.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o stomat.o stomat.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o TEMP.o TEMP.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o tend.o tend.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o tgrund.o tgrund.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o tpfc.o tpfc.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o tracbud.o tracbud.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o tracdiag.o tracdiag.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o tractend2.o tractend2.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o trcab.o trcab.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o trcabn.o trcabn.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o trcems.o trcems.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o trcmix.o trcmix.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o trcplk.o trcplk.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o trcpth.o trcpth.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o tseice.o tseice.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o tstep.o tstep.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o vadv.o vadv.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o vcheke.o vcheke.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o vcheki.o vcheki.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o vchekt.o vchekt.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o vcover.o vcover.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o vecbats.o vecbats.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o vmodes.o vmodes.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o vmultm.o vmultm.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o vnorml.o vnorml.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o vorder.o vorder.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o vprntm.o vprntm.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o vprntv.o vprntv.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o vtlaps.o vtlaps.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o water.o water.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o wheneq.o wheneq.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o whenfgt.o whenfgt.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o whenflt.o whenflt.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o whenne.o whenne.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o zengocndrv.o zengocndrv.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o zengocn.o zengocn.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o zenith.o zenith.f
/opt/mpich2/intel/bin/mpif90   -convert big_endian  -c
-o zenitm.o zenitm.f
/opt/mpich2/intel/bin/mpif90   -o regcm -convert
big_endian aermix.o aeroppt.o aerout.o albedov.o
balanc.o balbak.o bconst.o bdyin.o bdyuv.o bdyval.o
blhnew.o BLOCKDATA001.o bmpara.o bndry.o carbon.o
cdiv.o chdrydep.o chemtap.o chrsetc.o chsrfem.o
cldefr.o cldems.o cldfrac.o co2.o colmod3.o conadv.o
condch.o condcq.o condtq.o conmas.o cumtran.o cupara.o
cuparan.o cup.o cupemandrv.o cupeman.o depth.o deriv.o
diffu.o diffut.o dragdn.o drag.o drip.o dsflx.o EDDY.o
elmhes.o eltran.o eomb.o FINDDATE.o for_next.o
frawat.o getdat.o grads_stuf.o hadv.o holtbl.o hqr2.o
hqr.o htdiff.o ice.o inirad.o initb.o INITDATE.o
init.o inidust.o initlk.o interf.o intmax.o invmtrx.o
isamax.o isrchfgt.o isrchfle.o lakedrv.o lake.o
lenchr.o lfdrag.o lftemp.o ljchrn.o lshfch.o lutbl.o
mapsmp.o maximi.o minimi.o MIXER.o mkfile.o nconvp.o
nudge.o o3data.o outprt.o output.o outsav.o outsrf.o
outsub.o outtap0.o outtap.o param.o pcp.o radabs.o
radclr.o radclw.o radcsw.o radctl.o radded.o radems.o
radini.o radinp.o radout.o radoz2.o radtap.o radtpl.o
reorder.o regcm.o resetr.o rg.o root.o satur.o saxpy.o
sgedi.o sgefa.o slice.o slice3d.o snow.o soilbc.o
solar1.o spinit.o spline.o splitf.o sponge.o spstep.o
sscal.o sswap.o stomat.o TEMP.o tend.o tgrund.o tpfc.o
tracbud.o tracdiag.o tractend2.o trcab.o trcabn.o
trcems.o trcmix.o trcplk.o trcpth.o tseice.o tstep.o
vadv.o vcheke.o vcheki.o vchekt.o vcover.o vecbats.o
vmodes.o vmultm.o vnorml.o vorder.o vprntm.o vprntv.o
vtlaps.o water.o wheneq.o whenfgt.o whenflt.o whenne.o
zengocndrv.o zengocn.o zenith.o zenitm.o -static
/opt/intel/fce/9.0/lib/libifcore.a(for_open_proc.o)(.text+0xc0b):
In function `for__compute_filename':
: warning: Using 'getpwnam' in statically linked
applications requires at runtime the shared libraries
from the glibc version used for linking
/opt/intel/fce/9.0/lib/libifcore.a(for_open_proc.o)(.text+0xd3c):
In function `for__compute_filename':
: warning: Using 'getpwuid' in statically linked
applications requires at runtime the shared libraries
from the glibc version used for linking
/opt/mpich2/intel/lib/libmpich.a(ch3u_connect_sock.o)(.text+0x974):
In function `MPIDI_CH3U_Get_business_card_sock':
: warning: Using 'gethostbyname' in statically linked
applications requires at runtime the shared libraries
from the glibc version used for linking
Segmentation fault

Many thanks, in advance.

Ernesto R Verceles
Weather Specialist II
Philippine Atmospheric, Geophysical and 
Astronomical Services Administration (PAGASA)




 
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